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PDB: 903 results

8EKL
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Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 1
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Abeyawardhane, D.L, Pozharski, E.
Deposit date:2022-09-21
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
To Be Published
8EKM
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Clostridioides difficile binary toxin translocase CDTb double mutant - D623A D734A
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Abeyawardhane, D.L, Pozharski, E.
Deposit date:2022-09-21
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
To Be Published
8EKK
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Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 2
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Abeyawardhane, D.L, Pozharski, E.
Deposit date:2022-09-21
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
To Be Published
2R1L
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OpdA from Agrobacterium radiobacter with bound diethyl thiophosphate from crystal soaking with the compound- 1.95 A
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, FE (II) ION, ...
Authors:Ollis, D.L, Jackson, C.J, Foo, J.L, Kim, H.K, Carr, P.D, Liu, J.W, Salem, G.
Deposit date:2007-08-23
Release date:2008-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase
J.Mol.Biol., 375, 2008
2R1N
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OpdA from Agrobacterium radiobacter with bound slow substrate diethyl 4-methoxyphenyl phosphate (20h)- 1.7 A
Descriptor: COBALT (II) ION, DIETHYL 4-METHOXYPHENYL PHOSPHATE, FE (II) ION, ...
Authors:Ollis, D.L, Jackson, C.J, Foo, J.L, Kim, H.K, Carr, P.D, Liu, J.W, Salem, G.
Deposit date:2007-08-23
Release date:2008-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase
J.Mol.Biol., 375, 2008
8F6K
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Cryo-EM structure of a Zinc-loaded H263A/D287A mutant of the YiiP-Fab complex
Descriptor: Cadmium and zinc efflux pump FieF, ZINC ION
Authors:Lopez-Redondo, M.L, Hussein, A.K, Stokes, D.L.
Deposit date:2022-11-16
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Characterization of individual Zn2+ binding sites of YiiP
To Be Published
8F6E
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Cryo-EM structure of a Zinc-loaded wild-type YiiP-Fab complex
Descriptor: Cadmium and zinc efflux pump FieF, Fab heavy chain, Fab light chain, ...
Authors:Lopez-Redondo, M.L, Hussein, A.K, Stokes, D.L.
Deposit date:2022-11-16
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Characterization of individual Zn2+ binding sites of YiiP
To Be Published
8F6H
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BU of 8f6h by Molmil
Cryo-EM structure of a Zinc-loaded asymmetrical TMD D70A mutant of the YiiP-Fab complex
Descriptor: Cadmium and zinc efflux pump FieF, Fab2r heavy chain, Fab2r light chain, ...
Authors:Lopez-Redondo, M.L, Hussein, A.K, Stokes, D.L.
Deposit date:2022-11-16
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Characterization of individual Zn2+ binding sites of YiiP
To Be Published
8F6F
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Cryo-EM structure of a Zinc-loaded D51A mutant of the YiiP-Fab complex
Descriptor: Cadmium and zinc efflux pump FieF, Fab2r heavy chain, Fab2r light chain, ...
Authors:Lopez-Redondo, M.L, Hussein, A.K, Stokes, D.L.
Deposit date:2022-11-16
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Characterization of individual Zn2+ binding sites of YiiP
To Be Published
2R1P
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OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, FE (II) ION, ...
Authors:Ollis, D.L, Jackson, C.J, Foo, J.L, Kim, H.K, Carr, P.D, Liu, J.W, Salem, G.
Deposit date:2007-08-23
Release date:2008-02-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase
J.Mol.Biol., 375, 2008
8F6J
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BU of 8f6j by Molmil
Cryo-EM structure of a Zinc-loaded D287A mutant of the YiiP-Fab complex
Descriptor: Cadmium and zinc efflux pump FieF, Fab2r heavy chain, Fab2r light chain, ...
Authors:Lopez-Redondo, M.L, Hussein, A.K, Stokes, D.L.
Deposit date:2022-11-16
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Characterization of individual Zn2+ binding sites of YiiP
To Be Published
2R31
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Crystal structure of atp12p from paracoccus denitrificans
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP12 ATPase
Authors:Ludlam, A.V, Brunzelle, J.S, Gatti, D.L, Ackerman, S.H.
Deposit date:2007-08-28
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1 Å)
Cite:Chaperones of F1-ATPase.
J.Biol.Chem., 284, 2009
8F6I
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BU of 8f6i by Molmil
Cryo-EM structure of a Zinc-loaded symmetrical D70A mutant of the YiiP-Fab complex
Descriptor: Cadmium and zinc efflux pump FieF, Fab2r heavy chain, Fab2r light chain, ...
Authors:Lopez-Redondo, M.L, Hussein, A.K, Stokes, D.L.
Deposit date:2022-11-16
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Characterization of individual Zn2+ binding sites of YiiP
To Be Published
2R1M
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BU of 2r1m by Molmil
OpdA from Agrobacterium radiobacter with bound product diethyl phosphate from crystal soaking with diethyl 4-methoxyphenyl phosphate (450h)- 2.5 A
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, DIETHYL HYDROGEN PHOSPHATE, ...
Authors:Ollis, D.L, Jackson, C.J, Foo, J.L, Kim, H.K, Carr, P.D, Liu, J.W, Salem, G.
Deposit date:2007-08-23
Release date:2008-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase
J.Mol.Biol., 375, 2008
2QFH
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Solution Structure of the C-terminal SCR-16/20 fragment of Complement Factor H.
Descriptor: Complement factor H
Authors:Okemefuna, A.I, Gilbert, H.E, Griggs, K.M, Ormsby, R.J, Gordon, D.L, Perkins, S.J.
Deposit date:2007-06-27
Release date:2007-09-25
Last modified:2024-02-21
Method:SOLUTION SCATTERING
Cite:The regulatory SCR-1/5 and cell surface-binding SCR-16/20 fragments of factor H reveal partially folded-back solution structures and different self-associative properties.
J.Mol.Biol., 375, 2008
2R1K
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BU of 2r1k by Molmil
OpdA from Agrobacterium radiobacter with bound diethyl phosphate from crystal soaking with the compound- 1.9 A
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, DIETHYL HYDROGEN PHOSPHATE, ...
Authors:Ollis, D.L, Jackson, C.J, Foo, J.L, Kim, H.K, Carr, P.D, Liu, J.W, Salem, G.
Deposit date:2007-08-23
Release date:2008-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase
J.Mol.Biol., 375, 2008
2RC5
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BU of 2rc5 by Molmil
Refined structure of FNR from Leptospira interrogans
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin-NADP reductase, SULFATE ION, ...
Authors:Nascimento, A.S, Catalano-Dupuy, D.L, Polikarpov, I, Ceccarelli, E.A.
Deposit date:2007-09-19
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.431 Å)
Cite:Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+.
Bmc Struct.Biol., 7, 2007
2RC6
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Refined structure of FNR from Leptospira interrogans bound to NADP+
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin-NADP reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Nascimento, A.S, Catalano-Dupuy, D.L, Ceccarelli, E.A, Polikarpov, I.
Deposit date:2007-09-19
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+.
Bmc Struct.Biol., 7, 2007
8G7X
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BU of 8g7x by Molmil
Human fatty acid synthase dehydratase domain
Descriptor: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, ACETATE ION, DIMETHYL SULFOXIDE, ...
Authors:Akey, D.L, Konwerski, J.R, McCullough, T.M, Smith, J.L.
Deposit date:2023-02-17
Release date:2023-06-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.815 Å)
Cite:Structure of a modular polyketide synthase reducing region.
Structure, 31, 2023
2RN1
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Liquid crystal solution structure of the kissing complex formed by the apical loop of the HIV TAR RNA and a high affinity RNA aptamer optimized by SELEX
Descriptor: RNA (5'-R(P*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3'), RNA (5'-R(P*GP*CP*UP*GP*GP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3')
Authors:Van Melckebeke, H, Devany, M, Di Primo, C, Beaurain, F, Toulme, J, Bryce, D.L, Boisbouvier, J.
Deposit date:2007-12-05
Release date:2008-09-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex
Proc.Natl.Acad.Sci.Usa, 105, 2008
8GBT
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BU of 8gbt by Molmil
Time-resolve SFX structure of a photoproduct of carbon monoxide complex of bovine cytochrome c oxidase
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Ishigami, I, Yeh, S.-R, Rousseau, D.L.
Deposit date:2023-02-28
Release date:2023-09-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Detection of a Geminate Photoproduct of Bovine Cytochrome c Oxidase by Time-Resolved Serial Femtosecond Crystallography.
J.Am.Chem.Soc., 145, 2023
8GCQ
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SFX structure of oxidized cytochrome c oxidase at 2.38 Angstrom resolution
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Ishigami, I, Yeh, S.-R, Rousseau, D.L.
Deposit date:2023-03-02
Release date:2023-09-27
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural insights into functional properties of the oxidized form of cytochrome c oxidase.
Nat Commun, 14, 2023
2VCI
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4,5 Diaryl Isoxazole Hsp90 Chaperone Inhibitors: Potential Therapeutic Agents for the Treatment of Cancer
Descriptor: 5-[2,4-DIHYDROXY-5-(1-METHYLETHYL)PHENYL]-N-ETHYL-4-[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ISOXAZOLE-3-CARBOXAMIDE, HEAT SHOCK PROTEIN HSP 90-ALPHA
Authors:Brough, P.A, Aherne, W, Barril, X, Borgognoni, J, Boxal, K, Cansfield, J.E, Cheung, K.M, Collins, I, Davies, N.G.M, Drysdale, M.J, Dymock, B, Eccles, S.A, Finch, H, Fink, A, Hayes, A, Howes, R, Hubbard, R.E, James, K, Jordan, A.M, Lockie, A, Martins, V, Massey, A, Matthews, T.P, McDonald, E, Northfield, C.J, Pearl, L.H, Prodromou, C, Ray, S, Raynaud, F.I, Roughley, S.D, Sharp, S.Y, Surgenor, A, Walmsley, D.L, Webb, P, Wood, M, Workman, P, Wright, L.
Deposit date:2007-09-24
Release date:2007-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:4,5-diarylisoxazole Hsp90 chaperone inhibitors: potential therapeutic agents for the treatment of cancer.
J. Med. Chem., 51, 2008
2VCJ
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4,5 Diaryl Isoxazole Hsp90 Chaperone Inhibitors: Potential Therapeutic Agents for the Treatment of Cancer
Descriptor: 5-(5-chloro-2,4-dihydroxyphenyl)-N-ethyl-4-[4-(morpholin-4-ylmethyl)phenyl]isoxazole-3-carboxamide, HEAT SHOCK PROTEIN HSP 90-ALPHA
Authors:Brough, P.A, Aherne, W, Barril, X, Borgognoni, J, Boxal, K, Cansfield, J.E, Cheung, K.M, Collins, I, Davies, N.G.M, Drysdale, M.J, Dymock, B, Eccles, S.A, Finch, H, Fink, A, Hayes, A, Howes, R, Hubbard, R.E, James, K, Jordan, A.M, Lockie, A, Martins, V, Massey, A, Matthews, T.P, McDonald, E, Northfield, C.J, Pearl, L.H, Prodromou, C, Ray, S, Raynaud, F.I, Roughley, S.D, Sharp, S.Y, Surgenor, A, Walmsley, D.L, Webb, P, Wood, M, Workman, P, Wright, L.
Deposit date:2007-09-24
Release date:2007-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:4,5-diarylisoxazole Hsp90 chaperone inhibitors: potential therapeutic agents for the treatment of cancer.
J. Med. Chem., 51, 2008
2WBK
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Structure of the Michaelis complex of beta-mannosidase, Man2A, provides insight into the conformational itinerary of mannoside hydrolysis
Descriptor: 1,2-ETHANEDIOL, 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-mannopyranoside, BETA-MANNOSIDASE, ...
Authors:Offen, W.A, Zechel, D.L, Withers, S.G, Gilbert, H.J, Davies, G.J.
Deposit date:2009-03-02
Release date:2009-03-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Michaelis Complex of Beta-Mannosidase, Man2A, Provides Insight Into the Conformational Itinerary of Mannoside Hydrolysis.
Cell(Cambridge,Mass.), 18, 2009

219869

PDB entries from 2024-05-15

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