PDB Search results for query - Protein Data Bank Japan

PDB: 106 results

rsEGFP2 with a chlorinated chromophore in the fluorescent on-state in a contracted unit cell
Descriptor:	Green fluorescent protein, SULFATE ION
Authors:	Chang, J, Romei, M.G, Boxer, S.G.
Deposit date:	2019-06-22
Release date:	2019-08-07
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.759 Å)
Cite:	Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

5KP4

Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to 19-nortestosterone
Descriptor:	(8~{R},9~{S},10~{R},13~{S},14~{S},17~{S})-13-methyl-17-oxidanyl-2,6,7,8,9,10,11,12,14,15,16,17-dodecahydro-1~{H}-cyclop enta[a]phenanthren-3-one, Steroid Delta-isomerase
Authors:	Wu, Y, Boxer, S.G.
Deposit date:	2016-07-01
Release date:	2016-09-07
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (1.706 Å)
Cite:	A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase. J.Am.Chem.Soc., 138, 2016

5KP1

Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to Equilenin; D40N, Y16(Cl-Y)
Descriptor:	EQUILENIN, SULFATE ION, Steroid Delta-isomerase
Authors:	Wu, Y, Boxer, S.G.
Deposit date:	2016-07-01
Release date:	2016-09-07
Last modified:	2019-12-25
Method:	X-RAY DIFFRACTION (1.218 Å)
Cite:	A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase. J.Am.Chem.Soc., 138, 2016

5KP3

Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to Equilenin; D40N, Y57(Cl-Y)
Descriptor:	EQUILENIN, SULFATE ION, Steroid Delta-isomerase
Authors:	Wu, Y, Boxer, S.G.
Deposit date:	2016-07-01
Release date:	2016-09-07
Last modified:	2019-12-25
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase. J.Am.Chem.Soc., 138, 2016

4ZF5

Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51)
Descriptor:	Green fluorescent protein
Authors:	Oltrogge, L.M, Boxer, S.G.
Deposit date:	2015-04-21
Release date:	2015-06-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP). Acs Cent.Sci., 1, 2015

4ZF3

Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D; circular permutant ( 50-51)
Descriptor:	Green fluorescent protein
Authors:	Oltrogge, L.M, Boxer, S.G.
Deposit date:	2015-04-21
Release date:	2015-06-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP). Acs Cent.Sci., 1, 2015

4ZF4

Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
Descriptor:	Green fluorescent protein
Authors:	Oltrogge, L.M, Boxer, S.G.
Deposit date:	2015-04-21
Release date:	2015-06-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.823 Å)
Cite:	Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP). Acs Cent.Sci., 1, 2015

5D82

Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y16(Cl-Y)
Descriptor:	Delta(5)-3-ketosteroid isomerase
Authors:	Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:	2015-08-15
Release date:	2015-12-02
Last modified:	2019-12-25
Method:	X-RAY DIFFRACTION (1.37 Å)
Cite:	Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids. Biochemistry, 54, 2015

5D81

Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y57(Cl-Y)
Descriptor:	Delta(5)-3-ketosteroid isomerase, SULFATE ION
Authors:	Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:	2015-08-15
Release date:	2015-12-02
Last modified:	2019-12-25
Method:	X-RAY DIFFRACTION (1.39 Å)
Cite:	Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids. Biochemistry, 54, 2015

5D83

Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y32(Cl-Y)
Descriptor:	Delta(5)-3-ketosteroid isomerase
Authors:	Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:	2015-08-15
Release date:	2015-12-02
Last modified:	2019-12-25
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids. Biochemistry, 54, 2015

7MH8

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-methyltyrosine
Descriptor:	BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:	Mathews, I, Weaver, J, Boxer, S.G.
Deposit date:	2021-04-14
Release date:	2021-12-29
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA, 118, 2021

7MH4

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-bromotyrosine
Descriptor:	BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:	Mathews, I, Weaver, J, Boxer, S.G.
Deposit date:	2021-04-14
Release date:	2021-12-29
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.48 Å)
Cite:	Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA, 118, 2021

7MH5

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-iodotyrosine
Descriptor:	BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:	Mathews, I, Weaver, J, Boxer, S.G.
Deposit date:	2021-04-14
Release date:	2021-12-29
Method:	X-RAY DIFFRACTION (2.85 Å)
Cite:	Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA, 118, 2021

7MH3

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-chlorotyrosine
Descriptor:	BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:	Mathews, I, Weaver, J.B, Boxer, S.G.
Deposit date:	2021-04-14
Release date:	2021-12-29
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA, 118, 2021

7MH9

Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-nitrotyrosine
Descriptor:	BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:	Mathews, I, Weaver, J, Boxer, S.G.
Deposit date:	2021-04-14
Release date:	2021-12-29
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (3.1 Å)
Cite:	Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA, 118, 2021

6UMZ

Crystal structure of photoactive yellow protein (PYP); 3-Br-p-coumaric acid chromophore
Descriptor:	(2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
Authors:	Lin, C.-Y, Romei, M.G, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-07-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (0.9 Å)
Cite:	Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020

6UN7

Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-OMeY); ih circular permutant (50-51)
Descriptor:	Green fluorescent protein
Authors:	Lin, C.-Y, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-10-14
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020

6UMY

Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Lin, C.-Y, Romei, M.G, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-07-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (0.923 Å)
Cite:	Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020

6UN5

Crystal structure of green fluorescent protein (GFP); S65T, Y66(2,3,5-F3Y); ih circular permutant (50-51)
Descriptor:	Green fluorescent protein,Green fluorescent protein
Authors:	Lin, C.-Y, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-10-14
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.36 Å)
Cite:	Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020

6UN6

Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-NO2Y); ih circular permutant (50-51)
Descriptor:	Green fluorescent protein
Authors:	Lin, C.-Y, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-10-14
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020

6UFS

Crystal structure of ketosteroid isomerase from Pseudomonas putida (pKSI) bound to 5 alpha-dihydronandrolone
Descriptor:	5alpha-dihydronandrolone, Steroid Delta-isomerase
Authors:	Wu, Y, Boxer, S.G.
Deposit date:	2019-09-24
Release date:	2020-05-20
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.47 Å)
Cite:	A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase. J.Am.Chem.Soc., 142, 2020

6UN4

Crystal structure of rsEGFP2, Y67(3-ClY), Y107(3-ClY)
Descriptor:	Green fluorescent protein, SULFATE ION
Authors:	Lin, C.-Y, Romei, M.G, Boxer, S.G, Chang, J.
Deposit date:	2019-10-10
Release date:	2020-07-15
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.499 Å)
Cite:	Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020

6UN2

Crystal structure of photoactive yellow protein (PYP); C69U construct (selenocysteine incorporation)
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Lin, C.-Y, Romei, M.G, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-07-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (0.97 Å)
Cite:	Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020

6UN0

Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct with 3-Br-p-coumaric acid chromophore
Descriptor:	(2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
Authors:	Lin, C.-Y, Romei, M.G, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-07-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (0.85 Å)
Cite:	Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020

7SPV

Crystal structure of photoactive yellow protein (PYP); F92oCNF construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Weaver, J.B, Kirsh, J.M, Boxer, S.G.
Deposit date:	2021-11-03
Release date:	2022-05-11
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.18 Å)
Cite:	Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments. J.Am.Chem.Soc., 144, 2022

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Total results:	106
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Boxer, S.G."