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PDB: 42 results

6M8F
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BU of 6m8f by Molmil
Engineered sperm whale myoglobin-based carbene transferase
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Bacik, J.P, Ando, N, Fasan, R.
Deposit date:2018-08-21
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase.
Acs Catalysis, 9, 2019
4MO5
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BU of 4mo5 by Molmil
Crystal structure of AnmK bound to AMPPCP and anhMurNAc
Descriptor: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, Anhydro-N-acetylmuramic acid kinase, MAGNESIUM ION, ...
Authors:Bacik, J.P, Mark, B.L.
Deposit date:2013-09-11
Release date:2014-01-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Conformational Itinerary of Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase during Its Catalytic Cycle.
J.Biol.Chem., 289, 2014
8ESU
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BU of 8esu by Molmil
Myoglobin variant Mb-imi complex
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2022-10-14
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone.
Nat Commun, 14, 2023
8ESS
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BU of 8ess by Molmil
Myoglobin variant Mb-cIII complex
Descriptor: Myoglobin, SULFATE ION, [2,18-bis(2-carboxyethyl)-7,12-diethenyl-3,8,13,17-tetramethyl-21-(2-oxo-3-phenylpropyl)porphyrin-21-iumato(2-)-kappa~3~N~22~,N~23~,N~24~]iron(2+)
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2022-10-14
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone.
Nat Commun, 14, 2023
6UYK
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BU of 6uyk by Molmil
Dark-operative protochlorophyllide oxidoreductase in the nucleotide-free form.
Descriptor: CHLORIDE ION, IRON/SULFUR CLUSTER, Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Authors:Bacik, J.P, Imran, S.M.S, Watkins, M.B, Corless, E, Antony, E, Ando, N.
Deposit date:2019-11-13
Release date:2020-12-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and released upon ATP binding.
J.Biol.Chem., 296, 2020
4MO4
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Crystal structure of AnmK bound to AMPPCP
Descriptor: Anhydro-N-acetylmuramic acid kinase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Bacik, J.P, Mark, B.L.
Deposit date:2013-09-11
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Conformational Itinerary of Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase during Its Catalytic Cycle.
J.Biol.Chem., 289, 2014
2HZF
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BU of 2hzf by Molmil
Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes
Descriptor: Glutaredoxin-1
Authors:Bacik, J.P, Hazes, B.
Deposit date:2006-08-08
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of a Poxviral Glutaredoxin in the Oxidized and Reduced States Show Redox-correlated Structural Changes.
J.Mol.Biol., 365, 2007
2HZE
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Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes
Descriptor: Glutaredoxin-1
Authors:Bacik, J.P, Hazes, B.
Deposit date:2006-08-08
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of a Poxviral Glutaredoxin in the Oxidized and Reduced States Show Redox-correlated Structural Changes.
J.Mol.Biol., 365, 2007
7SPG
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BU of 7spg by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P212121
Descriptor: CHLORIDE ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPH
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BU of 7sph by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P21
Descriptor: Myoglobin, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPE
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BU of 7spe by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(O2beY)
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPF
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Crystal structure of sperm whale myoglobin variant sMb5(pCaaF)
Descriptor: Myoglobin, NITRATE ION, OXYGEN MOLECULE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
3QBX
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BU of 3qbx by Molmil
Crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-actetylmuramic acid kinase (ANMK) bound to 1,6-anhydro-n-actetylmuramic acid
Descriptor: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, Anhydro-N-acetylmuramic acid kinase, SULFATE ION
Authors:Bacik, J.P, Martin, D.R, Mark, B.L.
Deposit date:2011-01-14
Release date:2011-02-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Basis of 1,6-Anhydro Bond Cleavage and Phosphoryl Transfer by Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase.
J.Biol.Chem., 286, 2011
3QBW
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BU of 3qbw by Molmil
Crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-actetylmuramic acid kinase (ANMK) bound to adenosine diphosphate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Anhydro-N-acetylmuramic acid kinase, SULFATE ION
Authors:Bacik, J.P, Martin, D.R, Mark, B.L.
Deposit date:2011-01-14
Release date:2011-02-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Molecular Basis of 1,6-Anhydro Bond Cleavage and Phosphoryl Transfer by Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase.
J.Biol.Chem., 286, 2011
3PSE
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BU of 3pse by Molmil
Structure of a viral OTU domain protease bound to interferon-stimulated gene 15 (ISG15)
Descriptor: 1.7.6 3-bromanylpropan-1-amine, GLYCEROL, RNA polymerase, ...
Authors:Bacik, J.P, James, T.W, Frias-Staheli, N, Garcia-Sastre, A, Mark, B.L.
Deposit date:2010-12-01
Release date:2011-01-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the removal of ubiquitin and interferon-stimulated gene 15 by a viral ovarian tumor domain-containing protease.
Proc.Natl.Acad.Sci.USA, 108, 2011
3I2V
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BU of 3i2v by Molmil
Crystal structure of human MOCS3 rhodanese-like domain
Descriptor: Adenylyltransferase and sulfurtransferase MOCS3
Authors:Bacik, J.P, Walker, J.R, Lopez, L, Li, Y, Weigelt, J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2009-06-29
Release date:2009-07-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the human MOCS3 rhodanese-like domain
To be Published
3JYU
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BU of 3jyu by Molmil
Crystal structure of the N-terminal domains of the ubiquitin specific peptidase 4 (USP4)
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Ubiquitin carboxyl-terminal hydrolase
Authors:Bacik, J.P, Avvakumov, G, Walker, J.R, Xue, S, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2009-09-22
Release date:2009-10-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure of the N-terminal domains of the ubiquitin specific peptidase 4 (USP4)
To be Published
5TKR
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BU of 5tkr by Molmil
Crystal structure of a Lipomyces starkeyi levoglucosan kinase G359R mutant
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Levoglucosan kinase, MAGNESIUM ION, ...
Authors:Bacik, J.P, Klesmith, J.R, Michalczyk, R, Whitehead, T.A.
Deposit date:2016-10-07
Release date:2017-02-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Trade-offs between enzyme fitness and solubility illuminated by deep mutational scanning.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4YH5
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BU of 4yh5 by Molmil
Lipomyces starkeyi levoglucosan kinase bound to ADP and Manganese
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Levoglucosan kinase, ...
Authors:Bacik, J.P.
Deposit date:2015-02-26
Release date:2015-09-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Producing Glucose 6-Phosphate from Cellulosic Biomass: STRUCTURAL INSIGHTS INTO LEVOGLUCOSAN BIOCONVERSION.
J.Biol.Chem., 290, 2015
4ZFV
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BU of 4zfv by Molmil
Lipomyces starkeyi levoglucosan kinase bound to ADP and magnesium.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Levoglucosan kinase, ...
Authors:Bacik, J.P.
Deposit date:2015-04-21
Release date:2015-09-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Producing Glucose 6-Phosphate from Cellulosic Biomass: STRUCTURAL INSIGHTS INTO LEVOGLUCOSAN BIOCONVERSION.
J.Biol.Chem., 290, 2015
4ZXZ
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BU of 4zxz by Molmil
Crystal structure of a highly thermal stable but inactive levoglucosan kinase.
Descriptor: Levoglucosan kinase
Authors:Bacik, J.P, Klesmith, J.R, Whitehead, T.A.
Deposit date:2015-05-20
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Comprehensive Sequence-Flux Mapping of a Levoglucosan Utilization Pathway in E. coli.
Acs Synth Biol, 4, 2015
4ZLU
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BU of 4zlu by Molmil
Lipomyces starkeyi levoglucosan kinase bound to levoglucosan, ADP and magnesium.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Levoglucosan, ...
Authors:Bacik, J.P.
Deposit date:2015-05-01
Release date:2015-09-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Producing Glucose 6-Phosphate from Cellulosic Biomass: STRUCTURAL INSIGHTS INTO LEVOGLUCOSAN BIOCONVERSION.
J.Biol.Chem., 290, 2015
5BVC
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BU of 5bvc by Molmil
Crystal structure of Lipomyces starkeyi levoglucosan kinase bound to ADP, magnesium and levoglucosan in an alternate orientation.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Levoglucosan, Levoglucosan kinase, ...
Authors:Bacik, J.P.
Deposit date:2015-06-05
Release date:2015-09-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Producing Glucose 6-Phosphate from Cellulosic Biomass: STRUCTURAL INSIGHTS INTO LEVOGLUCOSAN BIOCONVERSION.
J.Biol.Chem., 290, 2015
5BSB
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BU of 5bsb by Molmil
Lipomyces starkeyi levoglucosan kinase bound to levoglucosan
Descriptor: Levoglucosan, Levoglucosan kinase, SULFATE ION
Authors:Bacik, J.P.
Deposit date:2015-06-01
Release date:2015-09-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Producing Glucose 6-Phosphate from Cellulosic Biomass: STRUCTURAL INSIGHTS INTO LEVOGLUCOSAN BIOCONVERSION.
J.Biol.Chem., 290, 2015
4GVH
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BU of 4gvh by Molmil
Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) covalently bound to 5-fluoro-GlcNAc.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-fluoro-N-acetyl-alpha-D-glucosamine, Beta-hexosaminidase
Authors:Bacik, J.P, Mark, B.L.
Deposit date:2012-08-30
Release date:2012-12-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012

 

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