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PDB: 22 results

5D1Y
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BU of 5d1y by Molmil
Low resolution crystal structure of human ribonucleotide reductase alpha6 hexamer in complex with dATP
Descriptor: Ribonucleoside-diphosphate reductase large subunit
Authors:Ando, N, Li, H, Brignole, E.J, Thompson, S, McLaughlin, M.I, Page, J, Asturias, F, Stubbe, J, Drennan, C.L.
Deposit date:2015-08-04
Release date:2016-01-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (9.005 Å)
Cite:Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer.
Biochemistry, 55, 2016
8DYZ
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BU of 8dyz by Molmil
Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Meisburger, S.P, Ando, N.
Deposit date:2022-08-05
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.272 Å)
Cite:Robust total X-ray scattering workflow to study correlated motion of proteins in crystals.
Nat Commun, 14, 2023
8DZ7
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BU of 8dz7 by Molmil
Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Meisburger, S.P, Imran, S.M.S, Ando, N.
Deposit date:2022-08-06
Release date:2022-09-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Robust total X-ray scattering workflow to study correlated motion of proteins in crystals.
Nat Commun, 14, 2023
6M8F
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BU of 6m8f by Molmil
Engineered sperm whale myoglobin-based carbene transferase
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Bacik, J.P, Ando, N, Fasan, R.
Deposit date:2018-08-21
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase.
Acs Catalysis, 9, 2019
6UYK
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BU of 6uyk by Molmil
Dark-operative protochlorophyllide oxidoreductase in the nucleotide-free form.
Descriptor: CHLORIDE ION, IRON/SULFUR CLUSTER, Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Authors:Bacik, J.P, Imran, S.M.S, Watkins, M.B, Corless, E, Antony, E, Ando, N.
Deposit date:2019-11-13
Release date:2020-12-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and released upon ATP binding.
J.Biol.Chem., 296, 2020
8ESU
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BU of 8esu by Molmil
Myoglobin variant Mb-imi complex
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2022-10-14
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone.
Nat Commun, 14, 2023
8ESS
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BU of 8ess by Molmil
Myoglobin variant Mb-cIII complex
Descriptor: Myoglobin, SULFATE ION, [2,18-bis(2-carboxyethyl)-7,12-diethenyl-3,8,13,17-tetramethyl-21-(2-oxo-3-phenylpropyl)porphyrin-21-iumato(2-)-kappa~3~N~22~,N~23~,N~24~]iron(2+)
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2022-10-14
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone.
Nat Commun, 14, 2023
7SPG
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BU of 7spg by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P212121
Descriptor: CHLORIDE ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPH
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BU of 7sph by Molmil
Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P21
Descriptor: Myoglobin, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPE
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BU of 7spe by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(O2beY)
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
7SPF
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BU of 7spf by Molmil
Crystal structure of sperm whale myoglobin variant sMb5(pCaaF)
Descriptor: Myoglobin, NITRATE ION, OXYGEN MOLECULE, ...
Authors:Bacik, J.P, Fasan, R, Ando, N.
Deposit date:2021-11-02
Release date:2022-06-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization.
Biochemistry, 61, 2022
8G3H
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BU of 8g3h by Molmil
Structure of cobalamin-dependent methionine synthase (MetH) in a resting state
Descriptor: COBALAMIN, Methionine synthase, ZINC ION
Authors:Watkins, M.B, Ando, N.
Deposit date:2023-02-07
Release date:2023-06-28
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Conformational switching and flexibility in cobalamin-dependent methionine synthase studied by small-angle X-ray scattering and cryoelectron microscopy.
Proc.Natl.Acad.Sci.USA, 120, 2023
7URG
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BU of 7urg by Molmil
cryo-EM structure of ribonucleotide reductase from Synechococcus phage S-CBP4 bound with TTP
Descriptor: Ribonucleotide reductase, THYMIDINE-5'-TRIPHOSPHATE
Authors:Xu, D, Burnim, A.A, Ando, N.
Deposit date:2022-04-21
Release date:2022-09-07
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade.
Elife, 11, 2022
5V1Q
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BU of 5v1q by Molmil
Crystal structure of Streptococcus suis SuiB
Descriptor: IRON/SULFUR CLUSTER, Radical SAM
Authors:Davis, K.M, Bacik, J.P, Ando, N.
Deposit date:2017-03-02
Release date:2017-08-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1S
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BU of 5v1s by Molmil
Crystal structure of Streptococcus suis SuiB bound to S-adenosylmethionine
Descriptor: IRON/SULFUR CLUSTER, Radical SAM, S-ADENOSYLMETHIONINE
Authors:Davis, K.M, Bacik, J.P, Ando, N.
Deposit date:2017-03-02
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.492 Å)
Cite:Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1T
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BU of 5v1t by Molmil
Crystal structure of Streptococcus suis SuiB bound to precursor peptide SuiA
Descriptor: IRON/SULFUR CLUSTER, METHIONINE, Radical SAM, ...
Authors:Davis, K.M, Bacik, J.P, Ando, N.
Deposit date:2017-03-02
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6MV9
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BU of 6mv9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase, ...
Authors:Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
Deposit date:2018-10-24
Release date:2019-06-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MT9
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BU of 6mt9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
Deposit date:2018-10-19
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MVE
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BU of 6mve by Molmil
Reduced X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
Deposit date:2018-10-25
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MYX
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BU of 6myx by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited double-helical filament of NrdE alpha subunit with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase
Authors:Thomas, W.C, Bacik, J.P, Chen, J.Z, Ando, N.
Deposit date:2018-11-02
Release date:2019-06-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6O2H
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BU of 6o2h by Molmil
Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset
Descriptor: CHLORIDE ION, Lysozyme C, NITRATE ION
Authors:Meisburger, S.P, Ando, N.
Deposit date:2019-02-22
Release date:2020-02-26
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.212 Å)
Cite:Diffuse X-ray scattering from correlated motions in a protein crystal.
Nat Commun, 11, 2020
6MW3
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BU of 6mw3 by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited filament composed of NrdE alpha subunit and NrdF beta subunit with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase, Ribonucleoside-diphosphate reductase NrdF beta subunit
Authors:Thomas, W.C, Bacik, J.P, Kaelber, J.T, Ando, N.
Deposit date:2018-10-29
Release date:2019-06-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.65 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019

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