2RU8
| DnaT C-terminal domain | Descriptor: | Primosomal protein 1 | Authors: | Abe, Y, Tani, J, Fujiyama, S, Urabe, M, Sato, K, Aramaki, T, Katayama, T, Ueda, T. | Deposit date: | 2014-01-29 | Release date: | 2014-10-08 | Last modified: | 2023-06-14 | Method: | SOLUTION NMR | Cite: | Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex. Febs J., 281, 2014
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2RUP
| Solution structure of rat P2X4 receptor head domain | Descriptor: | P2X purinoceptor 4 | Authors: | Abe, Y, Igawa, T, Tsuda, M, Inoue, K, Ueda, T. | Deposit date: | 2014-11-12 | Release date: | 2015-02-04 | Last modified: | 2023-06-14 | Method: | SOLUTION NMR | Cite: | Solution structure of the rat P2X4 receptor head domain involved in inhibitory metal binding FEBS Lett., 589, 2015
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1OM2
| SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORT RECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCE PEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH) | Descriptor: | PROTEIN (MITOCHONDRIAL ALDEHYDE DEHYDROGENASE), PROTEIN (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20) | Authors: | Abe, Y, Shodai, T, Muto, T, Mihara, K, Torii, H, Nishikawa, S, Endo, T, Kohda, D. | Deposit date: | 1999-04-23 | Release date: | 2000-02-02 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20. Cell(Cambridge,Mass.), 100, 2000
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5YCQ
| Unique Specificity-Enhancing Factor for the AAA+ Lon Protease | Descriptor: | Heat shock protein HspQ | Authors: | Abe, Y, Shioi, S, Kita, S, Nakata, H, Maenaka, K, Kohda, D, Katayama, T, Ueda, T. | Deposit date: | 2017-09-08 | Release date: | 2018-04-11 | Method: | X-RAY DIFFRACTION (2.503 Å) | Cite: | X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation FEBS Lett., 591, 2017
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3WW6
| Crystal Structure of hen egg white lysozyme mutant N46D/D52S | Descriptor: | CHLORIDE ION, Lysozyme C | Authors: | Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T. | Deposit date: | 2014-06-17 | Release date: | 2015-06-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme. Protein Sci., 25, 2016
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3WW5
| Crystal Structure of hen egg white lysozyme mutant N46E/D52S | Descriptor: | CHLORIDE ION, Lysozyme C | Authors: | Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T. | Deposit date: | 2014-06-17 | Release date: | 2015-06-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme. Protein Sci., 25, 2016
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2D35
| Solution structure of Cell Division Reactivation Factor, CedA | Descriptor: | Cell division activator cedA | Authors: | Abe, Y, Watanabe, N, Matsuda, Y, Yoshida, Y, Katayama, T, Ueda, T. | Deposit date: | 2005-09-26 | Release date: | 2006-12-12 | Last modified: | 2022-03-09 | Method: | SOLUTION NMR | Cite: | Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli To be Published
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2E0G
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7BYU
| Crystal structure of Acidovorax avenae L-fucose mutarotase (apo form) | Descriptor: | 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase | Authors: | Watanabe, Y, Fukui, Y, Watanabe, S. | Deposit date: | 2020-04-24 | Release date: | 2020-05-27 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.206 Å) | Cite: | Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism. Biochem.Biophys.Res.Commun., 528, 2020
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7BYW
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7C0E
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7C0C
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6J7C
| Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex with proline | Descriptor: | PROLINE, Proline racemase | Authors: | Watanabe, Y, Watanabe, S, Itoh, Y, Watanabe, Y. | Deposit date: | 2019-01-17 | Release date: | 2019-02-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon. Biochem. Biophys. Res. Commun., 511, 2019
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7C0D
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7C03
| Crystal structure of POLArISact(T57S), genetically encoded probe for fluorescent polarization | Descriptor: | POLArISact(T57S) | Authors: | Tomabechi, Y, Sakai, N, Shirouzu, M. | Deposit date: | 2020-04-30 | Release date: | 2021-03-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.501 Å) | Cite: | POLArIS, a versatile probe for molecular orientation, revealed actin filaments associated with microtubule asters in early embryos. Proc.Natl.Acad.Sci.USA, 118, 2021
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4YTV
| Crystal structure of Mdm35 | Descriptor: | COBALT (II) ION, GLYCEROL, Mitochondrial distribution and morphology protein 35 | Authors: | Watanabe, Y, Tamura, Y, Kawano, S, Endo, T. | Deposit date: | 2015-03-18 | Release date: | 2015-08-12 | Last modified: | 2020-02-05 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria. Nat Commun, 6, 2015
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4YTW
| Crystal structure of Ups1-Mdm35 complex | Descriptor: | Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial | Authors: | Watanabe, Y, Tamura, Y, Kawano, S, Endo, T. | Deposit date: | 2015-03-18 | Release date: | 2015-08-12 | Last modified: | 2020-02-05 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria. Nat Commun, 6, 2015
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6JNJ
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6JNK
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5JGE
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6L06
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6L07
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6K9Y
| Crystal structure of human VAT-1 | Descriptor: | NITRATE ION, Synaptic vesicle membrane protein VAT-1 homolog | Authors: | Watanabe, Y, Endo, T. | Deposit date: | 2019-06-19 | Release date: | 2020-02-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural basis for interorganelle phospholipid transport mediated by VAT-1. J.Biol.Chem., 295, 2020
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7YPD
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5H09
| Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-ethyl2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-4-methylpentanoate | Descriptor: | Tyrosine-protein kinase HCK, ethyl (2~{S})-2-[[4-[4-azanyl-5-(4-phenoxyphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]cyclohexyl]amino]-4-methyl-pentanoate | Authors: | Tomabechi, Y, Kukimoto-Niino, M, Shirouzu, M. | Deposit date: | 2016-10-04 | Release date: | 2017-10-04 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.945 Å) | Cite: | Activity cliff for 7-substituted pyrrolo-pyrimidine inhibitors of HCK explained in terms of predicted basicity of the amine nitrogen. Bioorg. Med. Chem., 25, 2017
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