1XCI
 
 | | Mispair Aligned N3T-Butyl-N3T Interstrand Crosslink | | Descriptor: | 5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3' | | Authors: | da Silva, M.W, Bierbryer, R.G, Wilds, C.J, Noronha, A.M, Colvin, O.M, Miller, P.S, Gamcsik, M.P. | | Deposit date: | 2004-09-02 | | Release date: | 2005-08-16 | | Last modified: | 2018-06-06 | | Method: | SOLUTION NMR | | Cite: | Intrastrand base-stacking buttresses widening of major groove in interstrand cross-linked B-DNA.
Bioorg.Med.Chem., 13, 2005
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1N4B
 | | Solution Structure of the undecamer CGAAAC*TTTCG | | Descriptor: | 5'-D(*CP*GP*AP*AP*AP*CP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*D00*TP*TP*TP*CP*G)-3' | | Authors: | Webba da Silva, M, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P. | | Deposit date: | 2002-10-30 | | Release date: | 2003-11-04 | | Last modified: | 2014-06-25 | | Method: | SOLUTION NMR | | Cite: | Solution Structure of a DNA Duplex Containing
Mispair-Aligned N4C-Ethyl-N4C
Interstrand Cross-Linked Cytosines
Biochemistry, 41, 2002
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1S37
 | | Accomodation of Mispair-Aligned N3T-Ethyl-N3T DNA Interstrand Crosslink | | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3'), DNA (5'-D(*CP*GP*AP*AP*AP*TP*TP*TP*TP*CP*G)-3') | | Authors: | da Silva, M.W, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P. | | Deposit date: | 2004-01-12 | | Release date: | 2005-01-25 | | Last modified: | 2014-07-30 | | Method: | SOLUTION NMR | | Cite: | Accommodation of mispair aligned N3T-ethyl-N3T DNA interstrand cross link.
Biochemistry, 43, 2004
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2LZW
 | | DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link | | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), HEPTANE | | Authors: | Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. | | Deposit date: | 2012-10-11 | | Release date: | 2013-10-16 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.
Org.Biomol.Chem., 15, 2017
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2LZV
 | | DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link | | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), HEPTANE | | Authors: | Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. | | Deposit date: | 2012-10-11 | | Release date: | 2013-10-16 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.
Org.Biomol.Chem., 15, 2017
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2MH6
 | | Solution structure of DNA duplex containing N3T-ethylene-N1I interstrand cross-link | | Descriptor: | 5'-D(*CP*AP*GP*TP*TP*CP*CP*A)-3', 5'-D(*TP*GP*GP*AP*IP*CP*TP*G)-3' | | Authors: | Denisov, A.Y, O'Flaherty, D.K, Noronha, A.M, Wilds, C.J. | | Deposit date: | 2013-11-18 | | Release date: | 2014-07-02 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | NMR Structure of an Ethylene Interstrand Cross-Linked DNA which Mimics the Lesion Formed by 1,3-Bis(2-chloroethyl)-1-nitrosourea.
Chemmedchem, 9, 2014
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4JRD
 | | Crystal structure of the parallel double-stranded helix of poly(A) RNA | | Descriptor: | AMMONIUM ION, RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | | Authors: | Safaee, N, Noronha, A.M, Kozlov, G, Rodionov, D, Wilds, C.J, Sheldrick, G.M, Gehring, K. | | Deposit date: | 2013-03-21 | | Release date: | 2013-06-05 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (1 Å) | | Cite: | Structure of the parallel duplex of poly(A) RNA: evaluation of a 50 year-old prediction.
Angew.Chem.Int.Ed.Engl., 52, 2013
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5TGG
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1HO6
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1HOQ
 | | CHIMERIC RNA/DNA HAIRPIN | | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*C)-3') | | Authors: | Denisov, A.Y, Gehring, K. | | Deposit date: | 2000-12-11 | | Release date: | 2001-11-07 | | Last modified: | 2022-02-23 | | Method: | SOLUTION NMR | | Cite: | Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
Nucleic Acids Res., 29, 2001
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2LSC
 | | Solution structure of 2'F-ANA and ANA self-complementary duplex | | Descriptor: | DNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL)P*(A5O)P*(A5O)P*(UAR)P*(UAR)P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3') | | Authors: | Martin-Pintado, N, Yahyaee, M, Campos, R, Noronha, A, Wilds, C, Damha, M, Gonzalez, C. | | Deposit date: | 2012-04-26 | | Release date: | 2012-07-18 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion.
Nucleic Acids Res., 40, 2012
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8G91
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8G90
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5VXQ
 | | X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5 | | Descriptor: | AMMONIUM ION, DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3') | | Authors: | Xie, J, Chen, Y, Wei, X, Kozlov, G, Gehring, K. | | Deposit date: | 2017-05-23 | | Release date: | 2017-08-16 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.002 Å) | | Cite: | Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA.
Nucleic Acids Res., 45, 2017
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7SOR
 | | LaM domain of human LARP1 in complex with AAA RNA | | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, Isoform 2 of La-related protein 1, ... | | Authors: | Kozlov, G, Gehring, K. | | Deposit date: | 2021-11-01 | | Release date: | 2022-08-03 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
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7SOT
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7SOP
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7SOV
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7SOO
 | | LaM domain of human LARP1 | | Descriptor: | Isoform 2 of La-related protein 1, SODIUM ION, SULFATE ION | | Authors: | Kozlov, G, Gehring, K. | | Deposit date: | 2021-11-01 | | Release date: | 2022-08-03 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
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7SOU
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7SOS
 | | LaM domain of human LARP1 in complex with AAAA RNA | | Descriptor: | Isoform 2 of La-related protein 1, POTASSIUM ION, RNA (5'-R(*AP*AP*AP*A)-3') | | Authors: | Kozlov, G, Gehring, K. | | Deposit date: | 2021-11-01 | | Release date: | 2022-08-03 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.25 Å) | | Cite: | Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
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7SOQ
 | | LaM domain of human LARP1 in complex with AAA RNA | | Descriptor: | Isoform 2 of La-related protein 1, RNA (5'-R(*AP*AP*A)-3') | | Authors: | Kozlov, G, Gehring, K. | | Deposit date: | 2021-11-01 | | Release date: | 2022-08-03 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.15 Å) | | Cite: | Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
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4F02
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4F26
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4F25
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