2G5I
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![BU of 2g5i by Molmil](/molmil-images/mine/2g5i) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with ADP-AlF4 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-02-23 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.35 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2G5H
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![BU of 2g5h by Molmil](/molmil-images/mine/2g5h) | Structure of tRNA-Dependent Amidotransferase GatCAB | Descriptor: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-02-23 | Release date: | 2006-07-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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8HRF
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![BU of 8hrf by Molmil](/molmil-images/mine/8hrf) | |
3IP4
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![BU of 3ip4 by Molmil](/molmil-images/mine/3ip4) | The high resolution structure of GatCAB | Descriptor: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2009-08-17 | Release date: | 2009-11-24 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition Nucleic Acids Res., 38, 2010
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7CBD
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![BU of 7cbd by Molmil](/molmil-images/mine/7cbd) | Catalytic domain of Cellulomonas fimi Cel6B | Descriptor: | Exoglucanase A | Authors: | Nakamura, A, Ishiwata, D, Visootsat, A, Uchiyama, T, Mizutani, K, Kaneko, S, Murata, T, Igarashi, K, Iino, R. | Deposit date: | 2020-06-12 | Release date: | 2020-08-26 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases. J.Biol.Chem., 295, 2020
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4ZHR
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![BU of 4zhr by Molmil](/molmil-images/mine/4zhr) | Structure of HIV-1 RT Q151M mutant | Descriptor: | RT p51 subunit, RT p66 subunit | Authors: | Nakamura, A, Tamura, N, Yasutake, Y. | Deposit date: | 2015-04-27 | Release date: | 2015-11-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.601 Å) | Cite: | Structure of the HIV-1 reverse transcriptase Q151M mutant: insights into the inhibitor resistance of HIV-1 reverse transcriptase and the structure of the nucleotide-binding pocket of Hepatitis B virus polymerase. Acta Crystallogr.,Sect.F, 71, 2015
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4ZM7
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![BU of 4zm7 by Molmil](/molmil-images/mine/4zm7) | |
7CV1
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![BU of 7cv1 by Molmil](/molmil-images/mine/7cv1) | |
7EC8
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![BU of 7ec8 by Molmil](/molmil-images/mine/7ec8) | |
7ECB
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![BU of 7ecb by Molmil](/molmil-images/mine/7ecb) | |
2DT5
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![BU of 2dt5 by Molmil](/molmil-images/mine/2dt5) | Crystal Structure of TTHA1657 (AT-rich DNA-binding protein) from Thermus thermophilus HB8 | Descriptor: | AT-rich DNA-binding protein, CHLORIDE ION, GLYCEROL, ... | Authors: | Nakamura, A, Sosa, A, Komori, H, Kita, A, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-07-11 | Release date: | 2007-01-02 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.16 Å) | Cite: | Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution Proteins, 66, 2007
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5Z7M
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![BU of 5z7m by Molmil](/molmil-images/mine/5z7m) | SmChiA sliding-intermediate with chitohexaose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase A, ... | Authors: | Nakamura, A, Iino, R. | Deposit date: | 2018-01-30 | Release date: | 2018-09-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nat Commun, 9, 2018
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5Z7N
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![BU of 5z7n by Molmil](/molmil-images/mine/5z7n) | SmChiA sliding-intermediate with chitopentaose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase A, ... | Authors: | Nakamura, A, Iino, R. | Deposit date: | 2018-01-30 | Release date: | 2018-09-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nat Commun, 9, 2018
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5Z7O
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![BU of 5z7o by Molmil](/molmil-images/mine/5z7o) | SmChiA sliding-intermediate with chitotetraose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase A, GLYCEROL | Authors: | Nakamura, A, Iino, R. | Deposit date: | 2018-01-30 | Release date: | 2018-09-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nat Commun, 9, 2018
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5Z7P
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![BU of 5z7p by Molmil](/molmil-images/mine/5z7p) | SmChiA sliding-intermediate with chitotriose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase A, GLYCEROL | Authors: | Nakamura, A, Iino, R. | Deposit date: | 2018-01-30 | Release date: | 2018-09-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nat Commun, 9, 2018
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3VM6
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![BU of 3vm6 by Molmil](/molmil-images/mine/3vm6) | Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate | Descriptor: | 1,5-di-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Nakamura, A, Fujihashi, M, Aono, R, Sato, T, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2011-12-08 | Release date: | 2012-04-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 J.Biol.Chem., 287, 2012
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2E1O
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![BU of 2e1o by Molmil](/molmil-images/mine/2e1o) | Solution structure of RSGI RUH-028, a homeobox domain from human cDNA | Descriptor: | Homeobox protein PRH | Authors: | Nakamura, A, Ohnishi, S, Abe, T, Nameki, N, Tochio, N, Koshiba, S, Kigawa, T, Yokoyama, S, Kawaii, S, Hirota, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-10-27 | Release date: | 2006-11-14 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of RSGI RUH-028, a homeobox domain from human cDNA To be Published
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3A11
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![BU of 3a11 by Molmil](/molmil-images/mine/3a11) | Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 | Descriptor: | DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Translation initiation factor eIF-2B, ... | Authors: | Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-03-25 | Release date: | 2010-03-31 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 J.Biol.Chem., 287, 2012
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3A9C
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![BU of 3a9c by Molmil](/molmil-images/mine/3a9c) | Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate | Descriptor: | DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, RIBULOSE-1,5-DIPHOSPHATE, ... | Authors: | Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-10-22 | Release date: | 2010-11-03 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 J.Biol.Chem., 287, 2012
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2DF4
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![BU of 2df4 by Molmil](/molmil-images/mine/2df4) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+ | Descriptor: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-02-23 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2DQN
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![BU of 2dqn by Molmil](/molmil-images/mine/2dqn) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn | Descriptor: | ASPARAGINE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-05-29 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2F2A
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![BU of 2f2a by Molmil](/molmil-images/mine/2f2a) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Gln | Descriptor: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, GLUTAMINE, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2005-11-15 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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3WC0
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![BU of 3wc0 by Molmil](/molmil-images/mine/3wc0) | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with GTP | Descriptor: | GUANOSINE-5'-TRIPHOSPHATE, Likely histidyl tRNA-specific guanylyltransferase, MAGNESIUM ION | Authors: | Nakamura, A, Nemoto, T, Sonoda, T, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2013-05-24 | Release date: | 2013-12-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.03 Å) | Cite: | Structural basis of reverse nucleotide polymerization Proc.Natl.Acad.Sci.USA, 110, 2013
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3WBZ
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![BU of 3wbz by Molmil](/molmil-images/mine/3wbz) | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with ATP | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Likely histidyl tRNA-specific guanylyltransferase, MAGNESIUM ION | Authors: | Nakamura, A, Nemoto, T, Sonoda, T, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2013-05-24 | Release date: | 2013-12-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.392 Å) | Cite: | Structural basis of reverse nucleotide polymerization Proc.Natl.Acad.Sci.USA, 110, 2013
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3WC1
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![BU of 3wc1 by Molmil](/molmil-images/mine/3wc1) | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a G-1 deleted tRNA(His) | Descriptor: | 75-mer tRNA, Likely histidyl tRNA-specific guanylyltransferase | Authors: | Nakamura, A, Nemoto, T, Sonoda, T, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2013-05-24 | Release date: | 2013-12-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (4.18 Å) | Cite: | Structural basis of reverse nucleotide polymerization Proc.Natl.Acad.Sci.USA, 110, 2013
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