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1LWB
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BU of 1lwb by Molmil
Crystal structure of prokaryotic phospholipase A2 at atomic resolution
Descriptor: putative secreted protein
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2002-05-31
Release date:2003-06-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Atomic resolution structure of prokaryotic phospholipase A2: Analysis of internal motion and implication for a catalytic mechanism.
PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
1FAZ
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BU of 1faz by Molmil
THE CRYSTAL STRUCTURE OF PROKARYOTIC PHOSPHOLIPASE A2
Descriptor: PHOSPHOLIPASE A2
Authors:Matoba, Y, katsube, Y, Sugiyama, M.
Deposit date:2000-07-14
Release date:2001-07-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The crystal structure of prokaryotic phospholipase A2.
J.Biol.Chem., 277, 2002
1KP4
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BU of 1kp4 by Molmil
CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2
Descriptor: CALCIUM ION, phospholipase A2
Authors:Matoba, Y, Katsube, Y, Sugiyama, M.
Deposit date:2001-12-28
Release date:2002-09-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of prokaryotic phospholipase A2.
J.Biol.Chem., 277, 2002
5B1H
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BU of 5b1h by Molmil
Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum
Descriptor: Cystathionine beta-synthase, GLYCEROL, SULFATE ION
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2015-12-04
Release date:2016-12-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum
Protein Sci., 26, 2017
5B1I
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BU of 5b1i by Molmil
Crystal structure of K42A mutant of cystathionine beta-synthase from Lactobacillus plantarum in a complex with L-methionine
Descriptor: Cystathionine beta-synthase, N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE, SULFATE ION
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2015-12-04
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum
Protein Sci., 26, 2017
5Z0G
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BU of 5z0g by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 20 min at 298 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
1WXC
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BU of 1wxc by Molmil
Crystal Structure of the copper-free Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein
Descriptor: MelC, NITRATE ION, tyrosinase
Authors:Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
Deposit date:2005-01-20
Release date:2006-01-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1WX5
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BU of 1wx5 by Molmil
Crystal Structure of the copper-free Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein in the monoclinic crystal
Descriptor: CHLORIDE ION, MelC, SODIUM ION, ...
Authors:Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
Deposit date:2005-01-19
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1WX2
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BU of 1wx2 by Molmil
Crystal Structure of the oxy-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of hydrogenperoxide
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
Deposit date:2005-01-19
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
1WX4
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BU of 1wx4 by Molmil
Crystal structure of the oxy-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of dithiothreitol
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
Deposit date:2005-01-19
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
2AHL
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BU of 2ahl by Molmil
Crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein
Descriptor: CADDIE PROTEIN ORF378, COPPER (I) ION, NITRATE ION, ...
Authors:Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
Deposit date:2005-07-28
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
2AHK
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BU of 2ahk by Molmil
Crystal structure of the met-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein obtained by soking in cupric sulfate for 6 months
Descriptor: CADDIE PROTEIN ORF378, COPPER (II) ION, NITRATE ION, ...
Authors:Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
Deposit date:2005-07-28
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
6JIL
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BU of 6jil by Molmil
Crystal structure of D-cycloserine synthetase DcsG
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cycloserine biosynthesis protein DcsG, L(+)-TARTARIC ACID, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2019-02-22
Release date:2019-12-18
Last modified:2020-07-22
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Cyclization mechanism catalyzed by an ATP-grasp enzyme essential for d-cycloserine biosynthesis.
Febs J., 287, 2020
5Z0E
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BU of 5z0e by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the Y98F mutant of the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0L
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BU of 5z0l by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 9 h at 277 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0F
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BU of 5z0f by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 10 min at 298 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0M
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BU of 5z0m by Molmil
Crystal structure of copper-bound H63F-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 12 h at 298 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0K
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BU of 5z0k by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 4 h at 277 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0D
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BU of 5z0d by Molmil
1.16 A-resolution crystal structure of the deoxy-form tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0J
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BU of 5z0j by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 277 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0H
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BU of 5z0h by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0I
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BU of 5z0i by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 1 h at 277 K
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2017-12-19
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
3WA6
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BU of 3wa6 by Molmil
Crystal structure of tannase from Lactobacillus plantarum in the orthorhombic crystal
Descriptor: SULFATE ION, tannase
Authors:Matoba, Y, Tanaka, N, Sugiyama, M.
Deposit date:2013-04-27
Release date:2013-07-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic and mutational analyses of tannase from Lactobacillus plantarum
Proteins, 81, 2013
3WA7
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BU of 3wa7 by Molmil
Crystal structure of selenomethionine-labeled tannase from Lactobacillus plantarum in the orthorhombic crystal
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Matoba, Y, Tanaka, N, Sugiyama, M.
Deposit date:2013-04-27
Release date:2013-07-24
Last modified:2013-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic and mutational analyses of tannase from Lactobacillus plantarum.
Proteins, 81, 2013
3AWT
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BU of 3awt by Molmil
Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 20 hr: occupancy of Cu(II) is high
Descriptor: COPPER (II) ION, MelC, NITRATE ION, ...
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2011-03-26
Release date:2011-06-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein
J.Biol.Chem., 286, 2011

 

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