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4PV3
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BU of 4pv3 by Molmil
Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with Na+ cations
Descriptor: L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, SODIUM ION
Authors:Bejger, M, Gilski, M, Imiolczyk, B, Jaskolski, M.
Deposit date:2014-03-14
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase
Acta Crystallogr.,Sect.D, 70, 2014
4PV2
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BU of 4pv2 by Molmil
Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with K+ and Na+ cations
Descriptor: L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, NITRATE ION, ...
Authors:Bejger, M, Gilski, M, Imiolczyk, B, Clavel, D, Jaskolski, M.
Deposit date:2014-03-14
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase
Acta Crystallogr.,Sect.D, 70, 2014
4PU6
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BU of 4pu6 by Molmil
Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with K+ cations
Descriptor: ASPARTIC ACID, L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, ...
Authors:Bejger, M, Gilski, M, Imiolczyk, B, Jaskolski, M.
Deposit date:2014-03-12
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase
Acta Crystallogr.,Sect.D, 70, 2014
2TMK
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BU of 2tmk by Molmil
YEAST THYMIDYLATE KINASE COMPLEXED WITH 3'-AZIDO-3'-DEOXYTHYMIDINE MONOPHOSPHATE (AZT-MP)
Descriptor: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE, SULFATE ION, THYMIDYLATE KINASE
Authors:Lavie, A, Schlichting, I.
Deposit date:1997-06-12
Release date:1998-06-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of thymidylate kinase reveals the cause behind the limiting step in AZT activation.
Nat.Struct.Biol., 4, 1997
3QEN
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BU of 3qen by Molmil
S74E dCK in complex with 5-bromodeoxycytidine and UDP
Descriptor: 5-bromo-2'-deoxycytidine, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Lavie, A, Hazra, S.
Deposit date:2011-01-20
Release date:2011-03-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Post-translational phosphorylation of serine 74 of human deoxycytidine kinase favors the enzyme adopting the open conformation making it competent for nucleoside binding and release.
Biochemistry, 50, 2011
3QEO
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BU of 3qeo by Molmil
S74E-R104M-D133A dCK variant in complex with L-deoxythymidine and UDP
Descriptor: Deoxycytidine kinase, L-deoxythymidine, URIDINE-5'-DIPHOSPHATE
Authors:Lavie, A, Hazra, S.
Deposit date:2011-01-20
Release date:2011-03-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Post-translational phosphorylation of serine 74 of human deoxycytidine kinase favors the enzyme adopting the open conformation making it competent for nucleoside binding and release.
Biochemistry, 50, 2011
3QEJ
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BU of 3qej by Molmil
S74E-dCK mutant in complex with UDP
Descriptor: Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Hazra, S, Lavie, A.
Deposit date:2011-01-20
Release date:2011-03-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Post-translational phosphorylation of serine 74 of human deoxycytidine kinase favors the enzyme adopting the open conformation making it competent for nucleoside binding and release.
Biochemistry, 50, 2011
2CKP
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BU of 2ckp by Molmil
Crystal structure of Human Choline Kinase alpha-2 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHOLINE KINASE ALPHA
Authors:Malito, E, Lavie, A.
Deposit date:2006-04-20
Release date:2006-10-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Elucidation of Human Choline Kinase Crystal Structures in Complex with the Products Adp or Phosphocholine.
J.Mol.Biol., 364, 2006
2CKO
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BU of 2cko by Molmil
Crystal structure of Human Choline Kinase alpha 2
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CHOLINE KINASE ALPHA
Authors:Malito, E, Lavie, A.
Deposit date:2006-04-20
Release date:2006-10-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Elucidation of Human Choline Kinase Crystal Structures in Complex with the Products Adp or Phosphocholine.
J.Mol.Biol., 364, 2006
2CKQ
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BU of 2ckq by Molmil
Crystal structure of Human Choline Kinase alpha 2 in complex with Phosphocholine
Descriptor: CHOLINE KINASE ALPHA, PHOSPHOCHOLINE
Authors:Malito, E, Lavie, A.
Deposit date:2006-04-20
Release date:2006-10-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Elucidation of Human Choline Kinase Crystal Structures in Complex with the Products Adp or Phosphocholine.
J.Mol.Biol., 364, 2006
1NCL
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BU of 1ncl by Molmil
THERMAL STABILITY OF HEXAMERIC AND TETRAMERIC NUCLEOSIDE, DIPHOSPHATE KINASES
Descriptor: NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Janin, J, Morera, S, Lascu, I.
Deposit date:1996-03-22
Release date:1996-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Thermal stability of hexameric and tetrameric nucleoside diphosphate kinases. Effect of subunit interaction.
J.Biol.Chem., 271, 1996
2ZIA
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BU of 2zia by Molmil
C4S dCK variant of dCK in complex with cladribine+UDP
Descriptor: 2-chloro-2'-deoxyadenosine, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-07-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Elucidation of different binding modes of purine nucleosides to human deoxycytidine kinase
J.Med.Chem., 51, 2008
2ZI5
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BU of 2zi5 by Molmil
C4S dCK variant of dCK in complex with L-dA+UDP
Descriptor: (2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-04-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural basis for substrate promiscuity of dCK
J.Mol.Biol., 378, 2008
2ZI9
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BU of 2zi9 by Molmil
C4S-E247A dCK variant of dCK in complex with cladribine+ADP
Descriptor: 2-chloro-2'-deoxyadenosine, ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-07-08
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Elucidation of different binding modes of purine nucleosides to human deoxycytidine kinase
J.Med.Chem., 51, 2008
2ZI7
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BU of 2zi7 by Molmil
C4S dCK variant of dCK in complex with D-dG+UDP
Descriptor: 2'-DEOXY-GUANOSINE, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-07-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Elucidation of different binding modes of purine nucleosides to human deoxycytidine kinase
J.Med.Chem., 51, 2008
2ZI3
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BU of 2zi3 by Molmil
C4S-E247A dCK variant of dCK in complex with D-dA+ADP
Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-04-22
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for substrate promiscuity of dCK
J.Mol.Biol., 378, 2008
2ZI4
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BU of 2zi4 by Molmil
C4S dCK variant of dCK in complex with L-dA+ADP
Descriptor: (2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase, ...
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-04-22
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for substrate promiscuity of dCK
J.Mol.Biol., 378, 2008
2ZI6
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BU of 2zi6 by Molmil
C4S dCK variant of dCK in complex with D-dA+UDP
Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Sabini, E, Lavie, A.
Deposit date:2008-02-13
Release date:2008-04-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural basis for substrate promiscuity of dCK
J.Mol.Biol., 378, 2008
2PEY
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BU of 2pey by Molmil
Crystal structure of deletion mutant of APS-kinase domain of human PAPS-synthetase 1
Descriptor: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-PHOSPHOSULFATE, Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1)
Authors:Sekulic, N, Lavie, A.
Deposit date:2007-04-03
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural mechanism for substrate inhibition of the adenosine 5'-phosphosulfate kinase domain of human 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 and its ramifications for enzyme regulation.
J.Biol.Chem., 282, 2007
2PEZ
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BU of 2pez by Molmil
Crystal structrue of deletion mutant of APS-kinase domain of human PAPS-synthetase 1 in complex with cyclic PAPS and dADP
Descriptor: (2S,3AR,4R,6R,6AR)-4-(6-AMINO-9H-PURIN-9-YL)-6-({[(R)-HYDROXY(SULFOOXY)PHOSPHORYL]OXY}METHYL)TETRAHYDROFURO[3,4-D][1,3,2]DIOXAPHOSPHOL-2-OL 2-OXIDE, 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1)
Authors:Sekulic, N, Lavie, A.
Deposit date:2007-04-03
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural mechanism for substrate inhibition of the adenosine 5'-phosphosulfate kinase domain of human 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 and its ramifications for enzyme regulation.
J.Biol.Chem., 282, 2007
2QJF
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BU of 2qjf by Molmil
Crystal structure of ATP-sulfurylase domain of human PAPS synthetase 1
Descriptor: ADENOSINE-5'-PHOSPHOSULFATE, Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1, POTASSIUM ION
Authors:Sekulic, N, Lavie, A.
Deposit date:2007-07-07
Release date:2008-11-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:ATP-sulfurylase domain of human bifunctional PAPS-synthetase oscillates between dimeric and monomeric forms
To be Published
1S1N
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BU of 1s1n by Molmil
SH3 domain of human nephrocystin
Descriptor: Nephrocystin 1
Authors:Le Maire, A, Weber, T, Saunier, S, Antignac, C, Ducruix, A, Dardel, F.
Deposit date:2004-01-07
Release date:2005-01-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR structure of the SH3 domain of human nephrocystin and analysis of a mutation-causing juvenile nephronophthisis.
Proteins, 59, 2005
4OSY
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BU of 4osy by Molmil
STRUCTURE of FULLY-CLEAVED GLYCINE-BOUND HUMAN L-ASPARAGINASE PROTEIN
Descriptor: GLYCINE, Isoaspartyl peptidase/L-asparaginase, SODIUM ION
Authors:Nomme, J, Lavie, A.
Deposit date:2014-02-13
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Free glycine accelerates the autoproteolytic activation of human asparaginase.
Chem.Biol., 20, 2013
4OSX
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BU of 4osx by Molmil
STRUCTURE of UNCLEAVED GLYCINE-BOUND HUMAN L-ASPARAGINASE PROTEIN
Descriptor: GLYCINE, Isoaspartyl peptidase/L-asparaginase, SODIUM ION
Authors:Nomme, J, Lavie, A.
Deposit date:2014-02-13
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Free Glycine Accelerates the Autoproteolytic Activation of Human Asparaginase.
Chem.Biol., 20, 2013
4PVR
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BU of 4pvr by Molmil
Crystal structure of partially-cleaved human l-asparaginase protein in complex with l-aspartate
Descriptor: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION
Authors:Nomme, J, Lavie, A.
Deposit date:2014-03-18
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis.
Biochemistry, 51, 2012

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