6S2C
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![BU of 6s2c by Molmil](/molmil-images/mine/6s2c) | Acquired functional capsid structures in metazoan totivirus-like dsRNA virus. | Descriptor: | Capsid protein | Authors: | Okamoto, K, Larsson, S.D.D, Maia, R.N.C.F, Murata, K, Hajdu, J, Iwasaki, K, Miyazaki, N. | Deposit date: | 2019-06-20 | Release date: | 2020-04-29 | Last modified: | 2024-05-22 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus. Structure, 28, 2020
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6ABU
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![BU of 6abu by Molmil](/molmil-images/mine/6abu) | Rat Xanthine oxidoreductase, NAD bound form | Descriptor: | BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-07-24 | Release date: | 2019-07-31 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.77 Å) | Cite: | Rat Xanthine oxidoreductase, NAD bound form To Be Published
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1N5X
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![BU of 1n5x by Molmil](/molmil-images/mine/1n5x) | Xanthine Dehydrogenase from Bovine Milk with Inhibitor TEI-6720 Bound | Descriptor: | 2-(3-CYANO-4-ISOBUTOXY-PHENYL)-4-METHYL-5-THIAZOLE-CARBOXYLIC ACID, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Okamoto, K, Eger, B.T, Nishino, T, Kondo, S, Pai, E.F, Nishino, T. | Deposit date: | 2002-11-07 | Release date: | 2003-03-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | An Extremely Potent Inhibitor of Xanthine Oxidoreductase: Crystal Structure of the Enzyme-Inhibitor Complex and Mechanism of Inhibition J.BIOL.CHEM., 278, 2003
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6AD4
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![BU of 6ad4 by Molmil](/molmil-images/mine/6ad4) | Rat Xanthine oxidoreductase, D428A variant, NADH bound form | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-07-30 | Release date: | 2019-07-31 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Rat Xanthine oxidoreductase, D428A variant, NAD bound form To Be Published
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6AJU
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![BU of 6aju by Molmil](/molmil-images/mine/6aju) | Rat Xanthine oxidoreductase | Descriptor: | BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-08-28 | Release date: | 2019-09-11 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Rat Xanthine oxidoreductase, D428A variant, NAD bound form To Be Published
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8J79
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![BU of 8j79 by Molmil](/molmil-images/mine/8j79) | |
1V97
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![BU of 1v97 by Molmil](/molmil-images/mine/1v97) | Crystal Structure of Bovine Milk Xanthine Dehydrogenase FYX-051 bound form | Descriptor: | 4-(5-PYRIDIN-4-YL-1H-1,2,4-TRIAZOL-3-YL)PYRIDINE-2-CARBONITRILE, ACETIC ACID, CALCIUM ION, ... | Authors: | Okamoto, K, Matsumoto, K, Hille, R, Eger, B.T, Pai, E.F, Nishino, T. | Deposit date: | 2004-01-21 | Release date: | 2004-06-22 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | The crystal structure of xanthine oxidoreductase during catalysis: Implications for reaction mechanism and enzyme inhibition. Proc.Natl.Acad.Sci.USA, 101, 2004
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6A7X
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![BU of 6a7x by Molmil](/molmil-images/mine/6a7x) | Rat Xanthine oxidoreductase, D428A variant, NAD bound form | Descriptor: | BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-07-05 | Release date: | 2019-07-24 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Rat Xanthine oxidoreductase, D428A variant, NAD bound form To Be Published
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6ADJ
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![BU of 6adj by Molmil](/molmil-images/mine/6adj) | Rat Xanthine oxidoreductase, D428E variant | Descriptor: | CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-08-01 | Release date: | 2019-08-07 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.18 Å) | Cite: | Rat Xanthine oxidoreductase, D428A variant, NAD bound form To Be Published
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6AC1
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![BU of 6ac1 by Molmil](/molmil-images/mine/6ac1) | Rat Xanthine oxidoreductase, NADH bound form | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-07-24 | Release date: | 2019-07-31 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.77 Å) | Cite: | Rat Xanthine oxidoreductase, D428A variant, NAD bound form To Be Published
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6AC4
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![BU of 6ac4 by Molmil](/molmil-images/mine/6ac4) | Rat Xanthine oxidoreductase, D428N variant | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Xanthine dehydrogenase/oxidase | Authors: | Okamoto, K, Kawaguchi, Y. | Deposit date: | 2018-07-25 | Release date: | 2019-08-28 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.19 Å) | Cite: | Rat Xanthine oxidoreductase, D428A variant, NAD bound form To Be Published
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3WZD
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![BU of 3wzd by Molmil](/molmil-images/mine/3wzd) | KDR in complex with ligand lenvatinib | Descriptor: | 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-{3-chloro-4-[(cyclopropylcarbamoyl)amino]phenoxy}-7-methoxyquinoline-6-carboxamide, ... | Authors: | Okamoto, K, Ikemori_Kawada, M, Inoue, A, Matsui, J. | Deposit date: | 2014-09-24 | Release date: | 2015-05-27 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | Distinct binding mode of multikinase inhibitor lenvatinib revealed by biochemical characterization. ACS MED.CHEM.LETT., 6, 2015
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3WZE
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![BU of 3wze by Molmil](/molmil-images/mine/3wze) | KDR in complex with ligand sorafenib | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE, ACETATE ION, ... | Authors: | Okamoto, K, Ikemori_Kawada, M, Inoue, A, Matsui, J. | Deposit date: | 2014-09-24 | Release date: | 2015-05-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Distinct binding mode of multikinase inhibitor lenvatinib revealed by biochemical characterization. ACS MED.CHEM.LETT., 6, 2015
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3AN1
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![BU of 3an1 by Molmil](/molmil-images/mine/3an1) | Crystal structure of rat D428A mutant, urate bound form | Descriptor: | BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T. | Deposit date: | 2010-08-27 | Release date: | 2010-12-01 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate J.Am.Chem.Soc., 132, 2010
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3AMZ
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![BU of 3amz by Molmil](/molmil-images/mine/3amz) | Bovine Xanthine Oxidoreductase urate bound form | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ... | Authors: | Okamoto, K, Eger, B.T, Pai, E.F, Nishino, T. | Deposit date: | 2010-08-27 | Release date: | 2010-12-01 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate J.Am.Chem.Soc., 132, 2010
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3BDJ
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![BU of 3bdj by Molmil](/molmil-images/mine/3bdj) | Crystal Structure of Bovine Milk Xanthine Dehydrogenase with a Covalently Bound Oxipurinol Inhibitor | Descriptor: | CALCIUM ION, CARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Eger, B.T, Okamoto, K, Nishino, T, Pai, E.F, Nishino, T. | Deposit date: | 2007-11-14 | Release date: | 2008-11-25 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Mechanism of inhibition of xanthine oxidoreductase by allopurinol: crystal structure of reduced bovine milk xanthine oxidoreductase bound with oxipurinol. Nucleosides Nucleotides Nucleic Acids, 27, 2008
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4YRW
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![BU of 4yrw by Molmil](/molmil-images/mine/4yrw) | rat xanthine oxidoreductase, C-terminal deletion protein variant | Descriptor: | BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Okamoto, K. | Deposit date: | 2015-03-16 | Release date: | 2015-04-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase Febs J., 282, 2015
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2Z5E
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![BU of 2z5e by Molmil](/molmil-images/mine/2z5e) | Crystal Structure of Proteasome Assembling Chaperone 3 | Descriptor: | Proteasome Assembling Chaperone 3 | Authors: | Okamoto, K, Kurimoto, E, Sakata, E, Suzuki, A, Yamane, T, Hirano, Y, Murata, S, Tanaka, K, Kato, K. | Deposit date: | 2007-07-06 | Release date: | 2008-02-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
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7NS0
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![BU of 7ns0 by Molmil](/molmil-images/mine/7ns0) | Bacilladnavirus capsid structure | Descriptor: | Capsid protein VP2 | Authors: | Munke, A, Okamoto, K. | Deposit date: | 2021-03-05 | Release date: | 2022-07-20 | Last modified: | 2022-09-14 | Method: | ELECTRON MICROSCOPY (2.4 Å) | Cite: | Primordial Capsid and Spooled ssDNA Genome Structures Unravel Ancestral Events of Eukaryotic Viruses. Mbio, 13, 2022
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1FO4
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![BU of 1fo4 by Molmil](/molmil-images/mine/1fo4) | CRYSTAL STRUCTURE OF XANTHINE DEHYDROGENASE ISOLATED FROM BOVINE MILK | Descriptor: | 2-HYDROXYBENZOIC ACID, CALCIUM ION, DIOXOTHIOMOLYBDENUM(VI) ION, ... | Authors: | Enroth, C, Eger, B.T, Okamoto, K, Nishino, T, Nishino, T, Pai, E.F. | Deposit date: | 2000-08-24 | Release date: | 2000-10-25 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structures of bovine milk xanthine dehydrogenase and xanthine oxidase: structure-based mechanism of conversion. Proc.Natl.Acad.Sci.USA, 97, 2000
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8R0G
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![BU of 8r0g by Molmil](/molmil-images/mine/8r0g) | Capsid structure of Giardiavirus (GLV) CAT strain | Descriptor: | Capsid protein | Authors: | Wang, H, Gianluca, M, Munke, A, Hassan, M.M, Lalle, M, Okamoto, K. | Deposit date: | 2023-10-31 | Release date: | 2024-04-03 | Method: | ELECTRON MICROSCOPY (2.6 Å) | Cite: | Capsid structure of Giardiavirus (GLV) CAT strain To Be Published
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8R0F
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![BU of 8r0f by Molmil](/molmil-images/mine/8r0f) | Capsid structure of Giardiavirus (GLV) HP strain | Descriptor: | Capsid protein | Authors: | Wang, H, Gianluca, M, Munke, A, Hassan, M.M, Lalle, M, Okamoto, K. | Deposit date: | 2023-10-31 | Release date: | 2024-04-03 | Method: | ELECTRON MICROSCOPY (2.14 Å) | Cite: | Capsid structure of Giardiavirus (GLV) HP strain To Be Published
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6SHL
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![BU of 6shl by Molmil](/molmil-images/mine/6shl) | Structure of a marine algae virus of the order Picornavirales | Descriptor: | VP1, VP2, VP3, ... | Authors: | Munke, A, Tomaru, Y, Kimura, K, Okamoto, K. | Deposit date: | 2019-08-07 | Release date: | 2020-02-12 | Last modified: | 2024-05-22 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Capsid Structure of a Marine Algal Virus of the Order Picornavirales . J.Virol., 94, 2020
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8B38
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![BU of 8b38 by Molmil](/molmil-images/mine/8b38) | |
8B3J
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![BU of 8b3j by Molmil](/molmil-images/mine/8b3j) | |