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6KDO

HIV-1 reverse transcriptase with Q151M/Y115F/F116Y/M184V/F160M:DNA:lamivudine 5'-triphosphate ternary complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(A, C)
HIV-1 reverse transcriptase p66 subunitpolymer55763985.32UniProt (D3XFN5)
Pfam (PF00078)
Pfam (PF06817)
Pfam (PF06815)
Pfam (PF00075)
UniProt (by SIFTS) (P12497)
Human immunodeficiency virus 1
2B, E
(B, D)
HIV-1 RT p51 subunitpolymer44451861.52UniProt (P12497)
Pfam (PF00078)
Pfam (PF06817)
Pfam (PF06815)
Human immunodeficiency virus type 1HIV-1 reverse transcriptase p51 subunit, p51 RT
3C, F
(E, F)
DNA/RNA (38-MER)polymer3811764.52synthetic construct
4G
(G)
beta-D-fructofuranose-(2-1)-alpha-D-glucopyranosebranched342.31In PDB
BIRD (PRD_900003)
sucrose
5H, I, L, M
(A, B, C, D)
GLYCEROLnon-polymer92.14Chemie (GOL)
6J, K
(E, C)
Lamivudine Triphosphatenon-polymer469.22Chemie (1RZ)
7N, O, P, Q, R...
(A, B, E, C, D...)
waterwater18.0192Chemie (HOH)
Sequence modifications
A, C: 1 - 555 (UniProt: D3XFN5)
PDBExternal DatabaseDetails
Met -1-expression tag
Val 0-expression tag
Phe 115Tyr 214engineered mutation
Tyr 116Phe 215engineered mutation
Met 151Gln 250engineered mutation
Met 160Phe 259engineered mutation
Ser 162Cys 261engineered mutation
Val 184Met 283engineered mutation
Ser 280Cys 379engineered mutation
B, D: 1 - 428 (UniProt: P12497)
PDBExternal DatabaseDetails
Met -15-expression tag
Ala -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
His -9-expression tag
His -8-expression tag
Ala -7-expression tag
Leu -6-expression tag
Glu -5-expression tag
Val -4-expression tag
Leu -3-expression tag
Phe -2-expression tag
Gln -1-expression tag
Gly 0-expression tag
Ser 162Cys 749engineered mutation
Ser 280Cys 867engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight255222.8
BranchedNumber of molecules1
Total formula weight342.3
Non-Polymers*Number of molecules6
Total formula weight1306.8
All*Total formula weight256871.9
*Water molecules are not included.

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PDB entries from 2025-07-02

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