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6D0O

rdpA dioxygenase holoenzyme

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenasepolymer30133977.24UniProt (Q8KSC8)
Pfam (PF02668)
In PDB
Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC 16415 / MH) (Sphingomonas herbicidovorans)RdpA,(R)-dichlorprop/(R)-mecoprop dioxygenase,Alpha-ketoglutarate-dependent dioxygenase,Dichlorprop/alpha-ketoglutarate-dioxygenase,Mecoprop/alpha-ketoglutarate-dioxygenase
2A, B, C, DCOBALT (II) IONnon-polymer58.94Chemie (CO)
3A, B, C, D2-OXOGLUTARIC ACIDnon-polymer146.14Chemie (AKG)
4waterwater18.0555Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 295 (UniProt: Q8KSC8)
PDBExternal DatabaseDetails
Gly 99Ala 99conflict
Asp 100Asn 100conflict
Ser 229Thr 229conflict
Glu 230Asp 230conflict
Lys 231Ala 231conflict
Glu 234Lys 234conflict
Ser 238Gln 238conflict
Phe 241Tyr 241conflict
Ala 242Glu 242conflict
Lys 246Arg 246conflict
Pro 247Phe 247conflict
Glu 248Asp 248conflict
Val 261Leu 261conflict
Tyr 271Arg 271conflict
Ile 273Val 273conflict
Asn 274Pro 274conflict
His 277Ala 277conflict
Gln 279Lys 279conflict
Thr 280Phe 280conflict
Ile 282Tyr 282conflict
His 284Thr 284conflict
His 296-expression tag
His 297-expression tag
His 298-expression tag
His 299-expression tag
His 300-expression tag
His 301-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight135909.0
Non-Polymers*Number of molecules8
Total formula weight820.1
All*Total formula weight136729.1
*Water molecules are not included.

220113

PDB entries from 2024-05-22

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