6D0O
rdpA dioxygenase holoenzyme
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | (R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase | polymer | 301 | 33977.2 | 4 | UniProt (Q8KSC8) Pfam (PF02668) In PDB | Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC 16415 / MH) (Sphingomonas herbicidovorans) | RdpA,(R)-dichlorprop/(R)-mecoprop dioxygenase,Alpha-ketoglutarate-dependent dioxygenase,Dichlorprop/alpha-ketoglutarate-dioxygenase,Mecoprop/alpha-ketoglutarate-dioxygenase |
2 | A, B, C, D | COBALT (II) ION | non-polymer | 58.9 | 4 | Chemie (CO) | |||
3 | A, B, C, D | 2-OXOGLUTARIC ACID | non-polymer | 146.1 | 4 | Chemie (AKG) | |||
4 | water | water | 18.0 | 555 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 295 (UniProt: Q8KSC8)
PDB | External Database | Details |
---|---|---|
Gly 99 | Ala 99 | conflict |
Asp 100 | Asn 100 | conflict |
Ser 229 | Thr 229 | conflict |
Glu 230 | Asp 230 | conflict |
Lys 231 | Ala 231 | conflict |
Glu 234 | Lys 234 | conflict |
Ser 238 | Gln 238 | conflict |
Phe 241 | Tyr 241 | conflict |
Ala 242 | Glu 242 | conflict |
Lys 246 | Arg 246 | conflict |
Pro 247 | Phe 247 | conflict |
Glu 248 | Asp 248 | conflict |
Val 261 | Leu 261 | conflict |
Tyr 271 | Arg 271 | conflict |
Ile 273 | Val 273 | conflict |
Asn 274 | Pro 274 | conflict |
His 277 | Ala 277 | conflict |
Gln 279 | Lys 279 | conflict |
Thr 280 | Phe 280 | conflict |
Ile 282 | Tyr 282 | conflict |
His 284 | Thr 284 | conflict |
His 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 135909.0 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 820.1 | |
All* | Total formula weight | 136729.1 |