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Mine: Large structure entries

1VVJ
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CRYSTAL STRUCTURE OF FRAMESHIFT SUPPRESSOR TRNA SUFA6 BOUND TO CODON CCC-G ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-05-24
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.44000111574 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
1VY4
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN THE PRE-ATTACK STATE OF PEPTIDE BOND FORMATION CONTAINING ACYLATED TRNA-SUBSTRATES IN THE A AND P SITES.
Descriptor:PROTEIN/RNA Complex
Authors:Polikanov, Y.S., Steitz, T.A., Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Modification date:2015-01-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
1VY5
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN THE POST-CATALYSIS STATE OF PEPTIDE BOND FORMATION CONTAINING DIPEPTYDIL-TRNA IN THE A SITE AND DEACYLATED TRNA IN THE P SITE.
Descriptor:PROTEIN/RNA Complex
Authors:Polikanov, Y.S., Steitz, T.A., Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Modification date:2015-01-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
1VY6
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN THE PRE-ATTACK STATE OF PEPTIDE BOND FORMATION CONTAINING SHORT SUBSTRATE-MIMIC CYTIDINE-PUROMYCIN IN THE A SITE AND ACYLATED TRNA IN THE P SITE.
Descriptor:PROTEIN/RNA Complex
Authors:Polikanov, Y.S., Steitz, T.A., Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Modification date:2015-01-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
1VY7
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CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN THE PRE-ATTACK STATE OF PEPTIDE BOND FORMATION CONTAINING SHORT SUBSTRATE-MIMIC CYTIDINE-CYTIDINE-PUROMYCIN IN THE A SITE AND ACYLATED TRNA IN THE P SITE.
Descriptor:PROTEIN/RNA Complex
Authors:Polikanov, Y.S., Steitz, T.A., Innis, C.A.
Deposit date:2014-05-13
Release date:2014-08-20
Modification date:2015-01-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol., 21, 2014
3J3Q
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ATOMIC-LEVEL STRUCTURE OF THE ENTIRE HIV-1 CAPSID
Descriptor:HIV-1 capsid
Authors:Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
Deposit date:2013-04-12
Release date:2013-05-29
Modification date:2014-12-10
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J3Y
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ATOMIC-LEVEL STRUCTURE OF THE ENTIRE HIV-1 CAPSID (186 HEXAMERS + 12 PENTAMERS)
Descriptor:HIV-1 capsid
Authors:Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.
Deposit date:2013-05-06
Release date:2013-05-29
Modification date:2014-12-10
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
3J6B
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STRUCTURE OF THE YEAST MITOCHONDRIAL LARGE RIBOSOMAL SUBUNIT
Descriptor:PROTEIN/RNA Complex
Authors:Amunts, A., Brown, A., Bai, X.C., Llacer, J.L., Hussain, T., Emsley, P., Long, F., Murshudov, G., Scheres, S.H.W., Ramakrishnan, V.
Deposit date:2014-01-22
Release date:2014-04-09
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the yeast mitochondrial large ribosomal subunit.
Science, 343, 2014
3J6X
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S. CEREVISIAE 80S RIBOSOME BOUND WITH TAURA SYNDROME VIRUS (TSV) IRES, 5 DEGREE ROTATION (CLASS II)
Descriptor:PROTEIN/RNA Complex
Authors:Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-04-16
Release date:2014-06-11
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J6Y
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S. CEREVISIAE 80S RIBOSOME BOUND WITH TAURA SYNDROME VIRUS (TSV) IRES, 2 DEGREE ROTATION (CLASS I)
Descriptor:PROTEIN/RNA Complex
Authors:Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-04-16
Release date:2014-06-11
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.
Proc.Natl.Acad.Sci.USA, 111, 2014
3J77
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STRUCTURES OF YEAST 80S RIBOSOME-TRNA COMPLEXES IN THE ROTATED AND NON-ROTATED CONFORMATIONS (CLASS II - ROTATED RIBOSOME WITH 1 TRNA)
Descriptor:60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L5, 60S ribosomal protein L6, 60S ribosomal protein L7, 60S ribosomal protein L8, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, 60S ribosomal protein L12, 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L16, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L20, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L25, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L28, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L33, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, 60S ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L40, 60S ribosomal protein L41, 60S ribosomal protein L42, 60S ribosomal protein L43, 60S acidic ribosomal protein P0, Guanine nucleotide-binding protein subunit beta-like protein, 40S ribosomal protein S0, 40S ribosomal protein S1, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, 40S ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17, 40S ribosomal protein S18, 40S ribosomal protein S19, 40S ribosomal protein S20, 40S ribosomal protein S21, 40S ribosomal protein S22, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, 40S ribosomal protein S30, 40S ribosomal protein S31
Authors:Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-05-29
Release date:2014-08-06
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations.
Structure, 22, 2014
3J78
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STRUCTURES OF YEAST 80S RIBOSOME-TRNA COMPLEXES IN THE ROTATED AND NON-ROTATED CONFORMATIONS (CLASS I - NON-ROTATED RIBOSOME WITH 2 TRNAS)
Descriptor:60S ribosomal protein L1, 60S ribosomal protein L2, 60S ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L5, 60S ribosomal protein L6, 60S ribosomal protein L7, 60S ribosomal protein L8, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, 60S ribosomal protein L12, 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L16, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L20, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L25, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L28, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L33, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, 60S ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L40, 60S ribosomal protein L41, 60S ribosomal protein L42, 60S ribosomal protein L43, 60S acidic ribosomal protein P0, Guanine nucleotide-binding protein subunit beta-like protein, 40S ribosomal protein S0, 40S ribosomal protein S1, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, 40S ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17, 40S ribosomal protein S18, 40S ribosomal protein S19, 40S ribosomal protein S20, 40S ribosomal protein S21, 40S ribosomal protein S22, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, 40S ribosomal protein S30, 40S ribosomal protein S31
Authors:Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.
Deposit date:2014-05-29
Release date:2014-08-06
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations.
Structure, 22, 2014
3J79
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CRYO-EM STRUCTURE OF THE PLASMODIUM FALCIPARUM 80S RIBOSOME BOUND TO THE ANTI-PROTOZOAN DRUG EMETINE, LARGE SUBUNIT
Descriptor:PROTEIN/RNA Complex
Authors:Wong, W., Bai, X.C., Brown, A., Fernandez, I.S., Hanssen, E., Condron, M., Tan, Y.H., Baum, J., Scheres, S.H.W.
Deposit date:2014-06-02
Release date:2014-07-16
Modification date:2015-06-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.
Elife, 3, 2014
3J7O
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STRUCTURE OF THE MAMMALIAN 60S RIBOSOMAL SUBUNIT
Descriptor:PROTEIN/RNA Complex
Authors:Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
Deposit date:2014-08-01
Release date:2014-09-03
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
Cell(Cambridge,Mass.), 157, 2014
3J7P
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STRUCTURE OF THE 80S MAMMALIAN RIBOSOME BOUND TO EEF2
Descriptor:PROTEIN/RNA Complex
Authors:Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
Deposit date:2014-08-01
Release date:2014-09-03
Modification date:2015-04-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
Cell(Cambridge,Mass.), 157, 2014
3J7Q
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STRUCTURE OF THE IDLE MAMMALIAN RIBOSOME-SEC61 COMPLEX
Descriptor:PROTEIN/RNA Complex
Authors:Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
Deposit date:2014-08-01
Release date:2014-09-03
Modification date:2014-12-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
Cell(Cambridge,Mass.), 157, 2014
3J7R
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STRUCTURE OF THE TRANSLATING MAMMALIAN RIBOSOME-SEC61 COMPLEX
Descriptor:PROTEIN/RNA Complex
Authors:Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.
Deposit date:2014-08-01
Release date:2014-09-03
Modification date:2015-04-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
Cell(Cambridge,Mass.), 157, 2014
3J8H
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STRUCTURE OF THE RABBIT RYANODINE RECEPTOR RYR1 IN COMPLEX WITH FKBP12 AT 3.8 ANGSTROM RESOLUTION
Descriptor:Ryanodine receptor 1, Peptidyl-prolyl cis-trans isomerase FKBP1A (E.C.5.2.1.8)
Authors:Yan, Z., Bai, X., Yan, C., Wu, J., Scheres, S.H.W., Shi, Y., Yan, N.
Deposit date:2014-10-26
Release date:2014-12-10
Modification date:2015-02-25
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.
Nature, 517, 2015
3J92
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STRUCTURE AND ASSEMBLY PATHWAY OF THE RIBOSOME QUALITY CONTROL COMPLEX
Descriptor:rabbit 60S ribosomal subunit in complex with tRNA, NEMF, Listerin (E.C.6.3.2.-), and nascent chain
Authors:Shao, S., Brown, A., Santhanam, B., Hegde, R.S.
Deposit date:2014-12-02
Release date:2015-01-21
Modification date:2015-02-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure and Assembly Pathway of the Ribosome Quality Control Complex.
Mol.Cell, 57, 2015
3J9G
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ATOMIC MODEL OF THE VIPA/VIPB, THE TYPE SIX SECRETION SYSTEM CONTRACTILE SHEATH OF VIBRIO CHOLERAE FROM CRYO-EM
Descriptor:VipA, VipB
Authors:Kudryashev, M., Wang, R.Y.-R., Brackmann, M., Scherer, S., Maier, T., Baker, D., DiMaio, F., Stahlberg, H., Egelman, E.H., Basler, M.
Deposit date:2015-01-16
Release date:2015-03-11
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the Type VI Secretion System Contractile Sheath.
Cell(Cambridge,Mass.), 160, 2015
3J9K
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STRUCTURE OF DARK APOPTOSOME IN COMPLEX WITH DRONC CARD DOMAIN
Descriptor:Apaf-1 related killer DARK, Caspase Nc (E.C.3.4.22.-)
Authors:Pang, Y., Bai, X., Yan, C., Hao, Q., Chen, Z., Wang, J., Scheres, S.H.W., Shi, Y.
Deposit date:2015-02-04
Release date:2015-02-25
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila.
Genes Dev., 29, 2015
3J9L
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STRUCTURE OF DARK APOPTOSOME FROM DROSOPHILA MELANOGASTER
Descriptor:Apaf-1 related killer DARK
Authors:Pang, Y., Bai, X., Yan, C., Hao, Q., Chen, Z., Wang, J., Scheres, S.H.W., Shi, Y.
Deposit date:2015-02-04
Release date:2015-02-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila.
Genes Dev., 29, 2015
3J9M
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STRUCTURE OF THE HUMAN MITOCHONDRIAL RIBOSOME (CLASS 1)
Descriptor:PROTEIN/RNA Complex
Authors:Amunts, A., Brown, A., Toots, J., Scheres, S.H., Ramakrishnan, V.
Deposit date:2015-02-08
Release date:2015-04-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Ribosome. The structure of the human mitochondrial ribosome.
Science, 348, 2015
3J9R
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ATOMIC STRUCTURES OF A BACTERICIDAL CONTRACTILE NANOTUBE IN ITS PRE- AND POST-CONTRACTION STATES
Descriptor:sheath
Authors:Ge, P., Scholl, D., Leiman, P.G., Yu, X., Miller, J.F., Zhou, Z.H.
Deposit date:2015-02-17
Release date:2015-04-01
Modification date:2015-05-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states.
Nat.Struct.Mol.Biol., 22, 2015
3J9W
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CRYO-EM STRUCTURE OF THE BACILLUS SUBTILIS MIFM-STALLED RIBOSOME COMPLEX
Descriptor:PROTEIN/RNA Complex
Authors:Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, C.A., Berninghausen, O., Beckmann, R., Ito, K., Wilson, D.N.
Deposit date:2015-03-16
Release date:2015-04-29
Modification date:2015-05-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling.
Nat Commun, 6, 2015
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