PDB: 14 resultsInfo pagesStatus searchChemie searchBIRD

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7SSA	Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome Descriptor: Centromere-binding protein 1, DNA (137-MER), Histone H2A.1, ... Authors: Eek, P, Tan, S. Deposit date: 2021-11-10 Release date: 2023-04-05 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Basic helix-loop-helix pioneer factors interact with the histone octamer to invade nucleosomes and generate nucleosome-depleted regions. Mol.Cell, 83, 2023
8OW0	Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome Descriptor: C0N3 DNA, Centromere-binding protein 1, Histone H2A.1, ... Authors: Dendooven, T.D, Zhang, Z, Yang, J, McLaughlin, S, Schwabb, J, Scheres, S, Yatskevich, S, Barford, D. Deposit date: 2023-04-26 Release date: 2023-08-09 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structure of the complete inner kinetochore of the budding yeast point centromere. Sci Adv, 9, 2023
8OVW	Cryo-EM structure of CBF1-CCAN bound topologically to centromeric DNA Descriptor: C0N3 DNA, Centromere-binding protein 1, Inner kinetochore subunit AME1, ... Authors: Dendooven, T.D, Zhang, Z, Yang, J, McLaughlin, S, Schwabb, J, Scheres, S, Yatskevich, S, Barford, D. Deposit date: 2023-04-26 Release date: 2023-08-09 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structure of the complete inner kinetochore of the budding yeast point centromere. Sci Adv, 9, 2023
8OW1	Cryo-EM structure of the yeast Inner kinetochore bound to a CENP-A nucleosome. Descriptor: C0N3, Centromere DNA-binding protein complex CBF3 subunit B, Centromere DNA-binding protein complex CBF3 subunit C, ... Authors: Dendooven, T.D, Zhang, Z, Yang, J, McLaughlin, S, Schwabb, J, Scheres, S, Yatskevich, S, Barford, D. Deposit date: 2023-04-26 Release date: 2023-08-09 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structure of the complete inner kinetochore of the budding yeast point centromere. Sci Adv, 9, 2023
3VKE	Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides Descriptor: DNA (5'-D(P*AP*CP*CP*CP*CP*A)-3'), Poly(rC)-binding protein 1 Authors: Traore, D.A.K, Wilce, M.C.J, Wilce, J.A. Deposit date: 2011-11-15 Release date: 2012-02-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides Nucleic Acids Res., 40, 2012
7JXG	Structural model for Fe-containing human acireductone dioxygenase Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, FE (II) ION Authors: Pochapsky, T.C, Liu, X, Deshpande, A, Ringe, D, Garber, A, Ryan, J. Deposit date: 2020-08-27 Release date: 2020-11-18 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A Model for the Solution Structure of Human Fe(II)-Bound Acireductone Dioxygenase and Interactions with the Regulatory Domain of Matrix Metalloproteinase I (MMP-I). Biochemistry, 59, 2020
4QGN	Human acireductone dioxygenase with iron ion and L-methionine in active center Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, ACETATE ION, CHLORIDE ION, ... Authors: Milaczewska, A.M, Chruszcz, M, Petkowski, J.J, Niedzialkowska, E, Minor, W, Borowski, T. Deposit date: 2014-05-23 Release date: 2015-05-27 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (3.05 Å) Cite: On the Structure and Reaction Mechanism of Human Acireductone Dioxygenase. Chemistry, 24, 2018
2NCO	NMR solution structure for the C-terminal domain of Tetrahymena Tcb2 in the absence of calcium Descriptor: 25 kDa calcium-binding protein Authors: Fowler, A, Kilpatrick, A.M. Deposit date: 2016-04-11 Release date: 2016-08-17 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution NMR structures of the C-domain of Tetrahymena cytoskeletal protein Tcb2 reveal distinct calcium-induced structural rearrangements. Proteins, 84, 2016
2NCP	NMR solution structure for the C-terminal domain of Tetrahymena Tcb2 in the presence of calcium Descriptor: 25 kDa calcium-binding protein Authors: Fowler, A, Kilpatrick, A.M. Deposit date: 2016-04-11 Release date: 2016-08-17 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution NMR structures of the C-domain of Tetrahymena cytoskeletal protein Tcb2 reveal distinct calcium-induced structural rearrangements. Proteins, 84, 2016
5I91	Structure of Mouse Acirecutone dioxygenase with to Ni2+ and 2-keto-4-(methylthio)-butyric acid in the active site Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID, NICKEL (II) ION Authors: Deshpande, A.R, Robinson, H, Wagenpfeil, K, Pochapsky, T.C, Petsko, G.A, Ringe, D. Deposit date: 2016-02-19 Release date: 2016-03-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry, 55, 2016
5I8T	Structure of Mouse Acireductone dioxygenase with Ni2+ ion and D-lactic acid in the active site Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, ISOPROPYL ALCOHOL, LACTIC ACID, ... Authors: Deshpande, A.R, Wagenpfeil, K, Pochapsky, T.C, Petsko, G.A, Ringe, D. Deposit date: 2016-02-19 Release date: 2016-03-09 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.751 Å) Cite: Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry, 55, 2016
5I8Y	Structure of Mouse Acireductone Dioxygenase bound to Co2+ and 2-keto-4-(methylthio)-butyric acid Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID, COBALT (II) ION Authors: Deshpande, A.R, Wagenpfeil, K, Pochapsky, T.C, Petsko, G.A, Ringe, D. Deposit date: 2016-02-19 Release date: 2016-03-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.942 Å) Cite: Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry, 55, 2016
5I93	Structure of Mouse Acireductone dioxygenase with Ni2+ and 2-ketopentanoic acid in the active site Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, 2-oxopentanoic acid, NICKEL (II) ION Authors: Deshpande, A.R, Wagenpfeil, K, Pochapsky, T.C, Petsko, G.A, Ringe, D. Deposit date: 2016-02-19 Release date: 2016-03-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.236 Å) Cite: Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry, 55, 2016
5I8S	Structure of Mouse Acireductone dioxygenase with Ni2+ ion and pentanoic acid in the active site Descriptor: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, NICKEL (II) ION, PENTANOIC ACID Authors: Deshpande, A.R, Wagenpfeil, K, Pochapsky, T.C, Petsko, G.A, Ringe, D. Deposit date: 2016-02-19 Release date: 2016-03-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry, 55, 2016