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8IBT
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BU of 8ibt by Molmil
Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis E318S mutant in complex with lacto-N-tetraose
Descriptor: Beta-galactosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Hidaka, M, Fushinobu, S, Gotoh, A, Katayama, T.
Deposit date:2023-02-10
Release date:2023-06-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis ( Bi Bga42A) revealed by crystallographic and mutational analyses.
Microbiome Res Rep, 2, 2023
8IBS
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BU of 8ibs by Molmil
Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis E160A/E318A mutant in complex with galactose
Descriptor: Beta-galactosidase, alpha-D-galactopyranose
Authors:Hidaka, M, Fushinobu, S, Gotoh, A, Katayama, T.
Deposit date:2023-02-10
Release date:2023-06-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis ( Bi Bga42A) revealed by crystallographic and mutational analyses.
Microbiome Res Rep, 2, 2023
8IBR
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BU of 8ibr by Molmil
Crystal structure of GH42 beta-galactosidase BiBga42A from Bifidobacterium longum subspecies infantis in complex with glycerol
Descriptor: Beta-galactosidase, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Hidaka, M, Fushinobu, S, Gotoh, A, Katayama, T.
Deposit date:2023-02-10
Release date:2023-06-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Substrate recognition mode of a glycoside hydrolase family 42 beta-galactosidase from Bifidobacterium longum subspecies infantis ( Bi Bga42A) revealed by crystallographic and mutational analyses.
Microbiome Res Rep, 2, 2023
7OMI
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BU of 7omi by Molmil
Bs164 in complex with mannocyclophellitol epoxide
Descriptor: (1R,2S,4S,5R)-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Armstrong, Z, Mcgregor, N, Davies, G.
Deposit date:2021-05-24
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Synthesis of broad-specificity activity-based probes for exo -beta-mannosidases.
Org.Biomol.Chem., 20, 2022
7OMS
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BU of 7oms by Molmil
Bs164 in complex with mannocyclophellitol aziridine
Descriptor: (1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:McGregor, N, Beenakker, T, Kuo, C.L, Wong, C.S, Offren, W.A, Armstrong, Z, Codee, J.D.C, Aerts, J.M.F.G, Florea, B.I, Overkleeft, H, Davies, G.J.
Deposit date:2021-05-24
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Synthesis of broad-specificity activity-based probes for exo -beta-mannosidases.
Org.Biomol.Chem., 20, 2022
6LVW
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BU of 6lvw by Molmil
Polyextremophilic Beta-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi
Descriptor: Beta-galactosidase Bga, MAGNESIUM ION, ZINC ION
Authors:Muhammad, R, Arold, S.T.
Deposit date:2020-02-06
Release date:2020-10-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:Understanding High-Salt and Cold Adaptation of a Polyextremophilic Enzyme.
Microorganisms, 8, 2020
6TVK
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BU of 6tvk by Molmil
Alpha-L-fucosidase isoenzyme 2 from Paenibacillus thiaminolyticus
Descriptor: Alpha-L-fucosidase, GLYCEROL, HEXATANTALUM DODECABROMIDE, ...
Authors:Kovalova, T, Koval, T, Lipovova, P, Dohnalek, J.
Deposit date:2020-01-09
Release date:2021-07-21
Last modified:2022-05-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The first structure-function study of GH151 alpha-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity
Febs J., 2022
6T75
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BU of 6t75 by Molmil
Bacteroides salyersiae GH164 beta-mannosidase 2-deoxy-2-fluoro-beta-D-mannosyl enzyme intermediate
Descriptor: 2-deoxy-2-fluoro-alpha-D-mannopyranose, CHLORIDE ION, Glyco_hydro_42M domain-containing protein
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-21
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6T7G
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BU of 6t7g by Molmil
Bacteroides salyersiae GH164 beta-mannosidase in complex with mannoimidazole
Descriptor: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-21
Release date:2019-12-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6T6G
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BU of 6t6g by Molmil
Bacteroides salyersiae GH164 beta-mannosidase in complex with noeuromycin
Descriptor: (2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-HYDROXYMETHYL-PIPERIDINE, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-18
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6T5O
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BU of 6t5o by Molmil
Bacteroides salyersiae GH164 beta-mannosidase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, D(-)-TARTARIC ACID, ...
Authors:Armstrong, Z, Davies, G.
Deposit date:2019-10-16
Release date:2020-01-01
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structure and function ofBs164 beta-mannosidase fromBacteroides salyersiaethe founding member of glycoside hydrolase family GH164.
J.Biol.Chem., 295, 2020
6JOW
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BU of 6jow by Molmil
Exo-beta-D-glucosaminidase from Pyrococcus furiosus
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-galactosidase, CALCIUM ION
Authors:Mine, S, Watanabe, M.
Deposit date:2019-03-24
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Exo-beta-D-glucosaminidase from Pyrococcus furiosus
To Be Published
5VYM
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BU of 5vym by Molmil
Crystal structure of beta-galactosidase from Bifidobacterium adolescentis
Descriptor: Beta-galactosidase BgaB
Authors:Chang, C, Cuff, M, Tesar, C, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2017-05-25
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.456 Å)
Cite:Crystal structure of beta-galactosidase from Bifidobacterium adolescentis
To Be Published
5XB7
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BU of 5xb7 by Molmil
GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04
Descriptor: Beta-galactosidase, GLYCEROL, SULFATE ION
Authors:Viborg, A.H, Katayama, T, Arakawa, T, Abou Hachem, M, Lo Leggio, L, Kitaoka, M, Svensson, B, Fushinobu, S.
Deposit date:2017-03-16
Release date:2017-11-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of alpha-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42.
J. Biol. Chem., 292, 2017
5E9A
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BU of 5e9a by Molmil
Crystal structure analysis of the cold-adamped beta-galactosidase from Rahnella sp. R3
Descriptor: ACETATE ION, Beta-galactosidase, ZINC ION
Authors:Zhang, Y.Z, Fan, Y.T.
Deposit date:2015-10-14
Release date:2016-10-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.561 Å)
Cite:Cloning, expression and structural stability of a cold-adapted beta-galactosidase from Rahnella sp. R3.
Protein Expr.Purif., 115, 2015
5DFA
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BU of 5dfa by Molmil
3D structure of the E323A catalytic mutant of Gan42B, a GH42 beta-galactosidase from G. stearothermophilus
Descriptor: Beta-galactosidase, GLYCEROL, ZINC ION
Authors:Solomon, H.V, Tabachnikov, O, Lansky, S, Feinberg, H, Govada, L, Chayen, N.E, Shoham, Y, Shoham, G.
Deposit date:2015-08-26
Release date:2015-12-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-function relationships in Gan42B, an intracellular GH42 beta-galactosidase from Geobacillus stearothermophilus.
Acta Crystallogr.,Sect.D, 71, 2015
4OIF
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BU of 4oif by Molmil
3D structure of Gan42B, a GH42 beta-galactosidase from G.
Descriptor: Beta-galactosidase, GLYCEROL, ZINC ION
Authors:Solomon, H.V, Tabachnikov, O, Feinberg, H, Shoham, Y, Shoham, G.
Deposit date:2014-01-19
Release date:2015-02-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.448 Å)
Cite:Crystallization and preliminary crystallographic analysis of GanB, a GH42 intracellular beta-galactosidase from Geobacillus stearothermophilus.
Acta Crystallogr.,Sect.F, 69, 2013
1KWK
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BU of 1kwk by Molmil
Crystal structure of Thermus thermophilus A4 beta-galactosidase in complex with galactose
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, BETA-GALACTOSIDASE, ...
Authors:Hidaka, M, Fushinobu, S, Ohtsu, N, Motoshima, H, Matsuzawa, H, Shoun, H, Wakagi, T.
Deposit date:2002-01-29
Release date:2002-10-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Trimeric crystal structure of the glycoside hydrolase family 42 beta-galactosidase from Thermus thermophilus A4 and the structure of its complex with galactose.
J.Mol.Biol., 322, 2002
1KWG
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BU of 1kwg by Molmil
Crystal structure of Thermus thermophilus A4 beta-galactosidase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, BETA-GALACTOSIDASE, ...
Authors:Hidaka, M, Fushinobu, S, Ohtsu, N, Motoshima, H, Matsuzawa, H, Shoun, H, Wakagi, T.
Deposit date:2002-01-29
Release date:2002-09-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Trimeric Crystal Structure of the Glycoside Hydrolase Family 42 beta-Galactosidase from Thermus thermophilus A4 and the Structure of its Complex with Galactose
J.MOL.BIOL., 322, 2002

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PDB entries from 2024-03-13

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