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8ZYH
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BU of 8zyh by Molmil
Crystal structure of a cupin protein (tm1459, I49C-4py/H52A/H54A/C106D mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin type-2 domain-containing protein, HEXAETHYLENE GLYCOL
Authors:Morita, Y, Kubo, H, Matsumoto, R, Fujieda, N.
Deposit date:2024-06-17
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Copper center in artificial non-heme metalloenzyme
To Be Published
8ZYG
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BU of 8zyg by Molmil
Crystal structure of a cupin protein (tm1459, I49C-4py/H52A/C106D mutant) in copper (Cu) substituted form
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COPPER (II) ION, Cupin type-2 domain-containing protein, ...
Authors:Morita, Y, Kubo, H, Matsumoto, R, Fujieda, N.
Deposit date:2024-06-17
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Copper center in artificial non-heme metalloenzyme
To Be Published
8OZ8
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BU of 8oz8 by Molmil
Crystal Structure of an Hydroxynitrile lyase variant (H96A) from Granulicella tundricola
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM, BROMIDE ION, ...
Authors:Bento, I, Coloma, J, Hagedoorn, P.-L, Hanefeld, U.
Deposit date:2023-05-08
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Can a Hydroxynitrile Lyase Catalyze an Oxidative Cleavage?
Acs Catalysis, 13, 2023
8HLF
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BU of 8hlf by Molmil
Crystal structure of DddK-DMSOP complex
Descriptor: 3-[dimethyl(oxidanyl)-$l^{4}-sulfanyl]propanoic acid, MANGANESE (II) ION, Novel protein with potential Cupin domain
Authors:Peng, M, Li, C.Y, Zhang, Y.Z.
Deposit date:2022-11-30
Release date:2023-10-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms.
Nat Microbiol, 8, 2023
8E8W
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BU of 8e8w by Molmil
Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 mononuclear Fe(II) structure on the HDO cofactor assembly pathway
Descriptor: Cupin domain-containing diiron protein, FE (II) ION
Authors:McBride, M.J, Boal, A.K.
Deposit date:2022-08-25
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 mononuclear Fe(II) structure on the HDO cofactor assembly pathway
To Be Published
8CH4
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BU of 8ch4 by Molmil
Crystal structure of the ring cleaving dioxygenase 5-nitrosalicylate 1,2-dioxygenase from Bradyrhizobium sp.
Descriptor: 5-nitrosalicylic acid 1,2-dioxygenase, FE (III) ION
Authors:Ferraroni, M, Stolz, A, Eppinger, E.
Deposit date:2023-02-07
Release date:2023-07-05
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the monocupin ring-cleaving dioxygenase 5-nitrosalicylate 1,2-dioxygenase from Bradyrhizobium sp.
Acta Crystallogr D Struct Biol, 79, 2023
8HJZ
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BU of 8hjz by Molmil
Crystal structure of a cupin protein (tm1459, H52A/H58Q mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Matsumoto, R, Kurisu, G, Fujieda, N.
Deposit date:2022-11-24
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.
Chem Sci, 14, 2023
8HJX
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BU of 8hjx by Molmil
Crystal structure of a cupin protein (tm1459, H52A/H58E mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Matsumoto, R, Kurisu, G, Fujieda, N.
Deposit date:2022-11-24
Release date:2023-06-14
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.
Chem Sci, 14, 2023
8HJY
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BU of 8hjy by Molmil
Crystal structure of a cupin protein (tm1459, H52A/H58E/F104W mutant) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Matsumoto, R, Kurisu, G, Fujieda, N.
Deposit date:2022-11-24
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.
Chem Sci, 14, 2023
7ZYB
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BU of 7zyb by Molmil
BeKdgF with Ca
Descriptor: CALCIUM ION, Cupin, GLYCEROL
Authors:Fredslund, F, Teze, D, Welner, D.H.
Deposit date:2022-05-24
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:BeKdgF with Ca
To Be Published
7ZYC
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BU of 7zyc by Molmil
BeKdgF with Zn
Descriptor: Cupin, GLYCEROL, ZINC ION
Authors:Fredslund, F, Teze, D, Welner, D.H.
Deposit date:2022-05-24
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:BeKdgF with Ca
To Be Published
8HFB
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BU of 8hfb by Molmil
Evolved variant of quercetin 2,4-dioxygenase from Bacillus subtilis
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, NICKEL (II) ION, ...
Authors:Eom, H, Song, W.J.
Deposit date:2022-11-10
Release date:2023-03-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Underlying Role of Hydrophobic Environments in Tuning Metal Elements for Efficient Enzyme Catalysis.
J.Am.Chem.Soc., 145, 2023
8AWO
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BU of 8awo by Molmil
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant AIFQ (Y7A/M38I/Y83F/C106Q)
Descriptor: Cupin_2 domain-containing protein
Authors:Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T.
Deposit date:2022-08-30
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation
Chem Ing Tech, 2023
8AWP
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BU of 8awp by Molmil
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant 208 (V19I/R23H/M38I/I60F/C106Q)
Descriptor: Cupin_2 domain-containing protein
Authors:Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T.
Deposit date:2022-08-30
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.595 Å)
Cite:Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation
Chem Ing Tech, 2023
8AWN
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BU of 8awn by Molmil
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant C106Q
Descriptor: CHLORIDE ION, Cupin_2 domain-containing protein
Authors:Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T.
Deposit date:2022-08-30
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation
Chem Ing Tech, 2023
7ZVM
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BU of 7zvm by Molmil
Thermococcus barophilus phosphomannose isomerase protein structure at 1.6 A
Descriptor: MAGNESIUM ION, Mannose-6-phosphate isomerase
Authors:Hoh, F, Calio, A.
Deposit date:2022-05-16
Release date:2022-08-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Unravelling the Adaptation Mechanisms to High Pressure in Proteins.
Int J Mol Sci, 23, 2022
7ZVY
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BU of 7zvy by Molmil
Thermococcus kadokarensis phosphomannose isomerase
Descriptor: Cupin_2 domain-containing protein, ZINC ION
Authors:Hoh, f, Calio, A.
Deposit date:2022-05-17
Release date:2022-08-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Unravelling the Adaptation Mechanisms to High Pressure in Proteins.
Int J Mol Sci, 23, 2022
6VZY
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BU of 6vzy by Molmil
Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 with a diiron(II) central domain cofactor
Descriptor: Cupin domain-containing diiron protein, FE (II) ION
Authors:McBride, M.J, Boal, A.K.
Deposit date:2020-02-28
Release date:2021-01-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structure and assembly of the diiron cofactor in the heme-oxygenase-like domain of the N -nitrosourea-producing enzyme SznF.
Proc.Natl.Acad.Sci.USA, 118, 2021
6XCV
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BU of 6xcv by Molmil
Crystal structure of apo SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697
Descriptor: Cupin domain-containing diiron protein
Authors:McBride, M.J, Boal, A.K.
Deposit date:2020-06-09
Release date:2021-01-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure and assembly of the diiron cofactor in the heme-oxygenase-like domain of the N -nitrosourea-producing enzyme SznF.
Proc.Natl.Acad.Sci.USA, 118, 2021
6L2F
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BU of 6l2f by Molmil
Crystal structure of a cupin protein (tm1459, H54AH58A mutant) in copper (Cu) substituted form
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, COPPER (II) ION, ...
Authors:Fujieda, N, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2019-10-03
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Cupin Variants as a Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes.
Angew.Chem.Int.Ed.Engl., 59, 2020
6L2D
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BU of 6l2d by Molmil
Crystal structure of a cupin protein (tm1459) in copper (Cu) substituted form
Descriptor: COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Fujieda, N, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2019-10-03
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.198 Å)
Cite:Cupin Variants as a Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes.
Angew.Chem.Int.Ed.Engl., 59, 2020
6L2E
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BU of 6l2e by Molmil
Crystal structure of a cupin protein (tm1459, H52A mutant) in copper (Cu) substituted form
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COPPER (II) ION, Cupin_2 domain-containing protein
Authors:Fujieda, N, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
Deposit date:2019-10-03
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.201 Å)
Cite:Cupin Variants as a Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes.
Angew.Chem.Int.Ed.Engl., 59, 2020
6A53
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BU of 6a53 by Molmil
Crystal structure of DddK
Descriptor: MANGANESE (II) ION, Novel protein with potential Cupin domain
Authors:Zhang, Y.Z, Li, C.Y.
Deposit date:2018-06-21
Release date:2019-02-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.
Appl. Environ. Microbiol., 85, 2019
6A54
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BU of 6a54 by Molmil
Crystal structure of DddK mutant Y64A
Descriptor: MANGANESE (II) ION, Novel protein with potential Cupin domain
Authors:Zhang, Y.Z, Li, C.Y.
Deposit date:2018-06-21
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.
Appl. Environ. Microbiol., 85, 2019
6A55
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BU of 6a55 by Molmil
Crystal structure of DddK mutant Y122A
Descriptor: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid, MANGANESE (II) ION, Novel protein with potential Cupin domain
Authors:Zhang, Y.Z, Li, C.Y.
Deposit date:2018-06-21
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.
Appl. Environ. Microbiol., 85, 2019

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PDB entries from 2024-09-18

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