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3KTZ
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BU of 3ktz by Molmil
Structure of GAP31
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein gelonin
Authors:Kong, X.-P.
Deposit date:2009-11-26
Release date:2010-01-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions.
Biochem.Biophys.Res.Commun., 391, 2010
4XY7
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BU of 4xy7 by Molmil
Crystal structure of the complex of ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 2.5 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein
Authors:Yamini, S, Pandey, S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2015-02-02
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the complex of ribosome inactivating protein from Momordica balsamina with N- acetylglucosamine at 2.5 A resolution
To Be Published
8CX8
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BU of 8cx8 by Molmil
Stx2A1-BTB13086
Descriptor: 1,2-ETHANEDIOL, 5-(4-chlorophenyl)furan-2-carboxylic acid, CHLORIDE ION, ...
Authors:Rudolph, M.J, Li, X.P.
Deposit date:2022-05-20
Release date:2024-03-06
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.905 Å)
Cite:Fragment Screening to Identify Inhibitors Targeting Ribosome Binding of Shiga Toxin 2.
Acs Infect Dis., 10, 2024
6CWG
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BU of 6cwg by Molmil
Ricin catalytic subunit bound go A9 VHH antibody
Descriptor: CHLORIDE ION, Ricin, VHH antibody
Authors:Rudolph, M.J, Mantis, N.
Deposit date:2018-03-30
Release date:2019-01-16
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Contribution of an unusual CDR2 element of a single domain antibody in ricin toxin binding affinity and neutralizing activity.
Protein Eng. Des. Sel., 31, 2018
2B7U
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BU of 2b7u by Molmil
Ribosome inactivating protein type 1 from Charybdis maritima AGG
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHARYBDIN
Authors:Gessmann, R, Petratos, K.
Deposit date:2005-10-05
Release date:2006-06-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Isolation, characterization, sequencing and crystal structure of charybdin, a type 1 ribosome-inactivating protein from Charybdis maritima agg.
Febs J., 273, 2006
5SV3
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BU of 5sv3 by Molmil
RTA1-33/44-198 (RVEC) bound to Single Domain Antibody A3C8
Descriptor: Anti-Ricin A-chain Single Domain Antibody (sdAb) A3C8, Ricin, SULFATE ION
Authors:Compton, J.R, Legler, P.M.
Deposit date:2016-08-04
Release date:2016-10-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Stability of isolated antibody-antigen complexes as a predictive tool for selecting toxin neutralizing antibodies.
MAbs, 9, 2017
8GCW
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BU of 8gcw by Molmil
Stx2A1(Y77A)-P6 peptide
Descriptor: P stalk protein, rRNA N-glycosylase
Authors:Rudolph, M.J, Li, X.P.
Deposit date:2023-03-03
Release date:2024-03-06
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Fragment Screening to Identify Inhibitors Targeting Ribosome Binding of Shiga Toxin 2.
Acs Infect Dis., 10, 2024
6Z1Y
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BU of 6z1y by Molmil
Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
Descriptor: SODIUM ION, Trichobakin
Authors:Boyko, K.M, Nikolaeva, A.Y, Britikov, V.V, Bocharov, E.V, Britikova, E.V, Le, T.B.T, Phan, C.V, Popov, V.O, Usanov, S.A.
Deposit date:2020-05-14
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of type-I ribosome-inactivating protein trichobakin (TBK)
To Be Published
6YTS
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BU of 6yts by Molmil
Solution NMR structure of type-I ribosome-inactivating protein trichobakin (TBK)
Descriptor: Trichobakin
Authors:Britikov, V.V, Bocharov, E.V, Britikova, E.V, Le, T.B.T, Phan, C.V, Boyko, K.M, Arseniev, A.S, Usanov, S.A.
Deposit date:2020-04-24
Release date:2020-05-06
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure and dynamics of type-I ribosome-inactivating protein trichobakin (TBK)
To Be Published
8I7P
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BU of 8i7p by Molmil
Crystal structure of Ricin A chain bound with N2-(2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-tyrosine
Descriptor: 6-(2-ethyl-4-hydroxyphenyl)-1H-indazole-3-carboxamide, Ricin A chain, SULFATE ION
Authors:Goto, M, Sakamoto, N, Higashi, S, Kawata, R, Nagatsu, K, Saito, R.
Deposit date:2023-02-01
Release date:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of ricin toxin A chain complexed with a highly potent pterin-based small-molecular inhibitor.
J Enzyme Inhib Med Chem, 38, 2023
5J57
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BU of 5j57 by Molmil
V5E1-RTA complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Ricin, ...
Authors:Rudolph, M.J.
Deposit date:2016-04-01
Release date:2016-12-07
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Analysis of Single Domain Antibodies Bound to a Second Neutralizing Hot Spot on Ricin Toxin's Enzymatic Subunit.
J. Biol. Chem., 292, 2017
5J56
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BU of 5j56 by Molmil
RTA-V1C7
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ...
Authors:Rudolph, M.J.
Deposit date:2016-04-01
Release date:2016-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Analysis of Single Domain Antibodies Bound to a Second Neutralizing Hot Spot on Ricin Toxin's Enzymatic Subunit.
J. Biol. Chem., 292, 2017
1QCI
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BU of 1qci by Molmil
LOW TEMPERATURE STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN COMPLEXED WITH ADENINE
Descriptor: ADENINE, POKEWEED ANTIVIRAL PROTEIN
Authors:Kurinov, I.V, Myers, D.E, Irvin, J.D, Uckun, F.M.
Deposit date:1999-05-05
Release date:1999-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs.
Protein Sci., 8, 1999
5U4M
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BU of 5u4m by Molmil
RTA-V1C7-G29R-no_salt
Descriptor: CHLORIDE ION, Ricin, V1C7 VHH antibody
Authors:Rudolph, M.J, Mantis, N.
Deposit date:2016-12-05
Release date:2017-12-13
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Using homology modeling to interrogate binding affinity in neutralization of ricin toxin by a family of single domain antibodies.
Proteins, 85, 2017
1QD2
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BU of 1qd2 by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF TRICHOSANTHIN WITH ADENINE, OBTAINED FROM TRICHOSANTHIN COMPLEXED WITH THE DINUCLEOTIDE APG
Descriptor: ADENINE, TRICHOSANTHIN
Authors:Gu, Y.J, Xia, Z.X.
Deposit date:1999-07-09
Release date:2000-04-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structures of the complexes of trichosanthin with four substrate analogs and catalytic mechanism of RNA N-glycosidase.
Proteins, 39, 2000
4Q2V
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BU of 4q2v by Molmil
Crystal Structure of Ricin A chain complexed with Baicalin inhibitor
Descriptor: 5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid, Ricin
Authors:Deng, X, Li, X, Dong, J, Chen, Y.
Deposit date:2014-04-10
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.198 Å)
Cite:Baicalin inhibits the lethality of ricin in mice by inducing protein oligomerization.
J.Biol.Chem., 290, 2015
5U4L
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BU of 5u4l by Molmil
RTA-V1C7_G29R-high-salt
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHATE ION, ...
Authors:Rudolph, M.J, Mantis, N.
Deposit date:2016-12-05
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Using homology modeling to interrogate binding affinity in neutralization of ricin toxin by a family of single domain antibodies.
Proteins, 85, 2017
1QCJ
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BU of 1qcj by Molmil
LOW TEMPERATURE COMPLEX OF POKEWEED ANTIVIRAL PROTEIN WITH PTEORIC ACID
Descriptor: 2-AMINO-6-[(4-CARBOXY-PHENYLAMINO)-METHYL]-4-HYDROXY-PTERIDIN-1-IUM, POKEWEED ANTIVIRAL PROTEIN
Authors:Kurinov, I.V, Myers, D.E, Irvin, J.D, Uckun, F.M.
Deposit date:1999-05-05
Release date:1999-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs.
Protein Sci., 8, 1999
4Q9F
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BU of 4q9f by Molmil
Crystal structure of type 1 ribosome inactivating protein from Momordica balsamina in complex with guanosine mono phosphate at 1.75 Angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Kushwaha, G.S, Pandey, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-05-01
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of type 1 ribosome inactivating protein from Momordica balsamina in complex with guanosine mono phosphate at 1.75 Angstrom resolution
To be Published
2Z53
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BU of 2z53 by Molmil
Crystal structure of the S211A mutant of the ribosome inactivating protein PDL4 from P. dioica leaves
Descriptor: 1,2-ETHANEDIOL, Ribosome-inactivating protein PD-L4
Authors:Berisio, R, Ruggiero, A.
Deposit date:2007-06-27
Release date:2008-02-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Atomic resolution (1.1 A) structure of the ribosome-inactivating protein PD-L4 from Phytolacca dioica L. leaves
Proteins, 71, 2008
4RZJ
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BU of 4rzj by Molmil
Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein
Authors:Pandey, S, Kushwaha, G.S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-12-22
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions
TO BE PUBLISHED
2Z4U
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BU of 2z4u by Molmil
Crystal structure of wild type PD-L4 from Phytolacca dioica leaves
Descriptor: 1,2-ETHANEDIOL, Ribosome-inactivating protein PD-L4
Authors:Ruggiero, A, Berisio, R.
Deposit date:2007-06-26
Release date:2008-02-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Atomic resolution (1.1 A) structure of the ribosome-inactivating protein PD-L4 from Phytolacca dioica L. leaves
Proteins, 71, 2008
5WV1
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BU of 5wv1 by Molmil
Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with ribose sugar at 1.90 A resolution.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein, ...
Authors:Shokeen, A, Singh, P.K, Pandey, S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2016-12-21
Release date:2017-01-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with ribose sugar at 1.90 A resolution.
To Be Published
5Y48
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BU of 5y48 by Molmil
Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4-dione at 1.70 Angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome inactivating protein, URACIL
Authors:Singh, P.K, Pandey, S, Iqbal, N, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2017-08-01
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding and structural studies of the complexes of type 1 ribosome inactivating protein from Momordica balsamina with uracil and uridine.
Proteins, 87, 2019
3BWH
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BU of 3bwh by Molmil
Atomic resolution structure of cucurmosin, a novel type 1 RIP from the sarcocarp of Cucurbita moschata
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chen, L.
Deposit date:2008-01-09
Release date:2008-10-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structure of cucurmosin, a novel type 1 ribosome-inactivating protein from the sarcocarp of Cucurbita moschata.
J.Struct.Biol., 164, 2008

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