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4UD5
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BU of 4ud5 by Molmil
Structural Plasticity of Cid1 Provides a Basis for its RNA Terminal Uridylyl Transferase Activity
Descriptor: POLY(A) RNA POLYMERASE PROTEIN CID1
Authors:Yates, L.A, Durrant, B.P, Fleurdepine, S, Harlos, K, Norbury, C.J, Gilbert, R.J.C.
Deposit date:2014-12-07
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural Plasticity of Cid1 Provides a Basis for its Distributive RNA Terminal Uridylyl Transferase Activity.
Nucleic Acids Res., 43, 2015
4NKU
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BU of 4nku by Molmil
Structure of Cid1 in complex with its short product ApU
Descriptor: 5'-R(*AP*U)-3', BROMIDE ION, MAGNESIUM ION, ...
Authors:Munoz-Tello, P, Gabus, C, Thore, S.
Deposit date:2013-11-13
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:A critical switch in the enzymatic properties of the Cid1 protein deciphered from its product-bound crystal structure.
Nucleic Acids Res., 42, 2014
4NKT
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BU of 4nkt by Molmil
Structure of Cid1 in complex with the UTP analog UMPNPP
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, BROMIDE ION, MAGNESIUM ION, ...
Authors:Munoz-Tello, P, Gabus, C, Thore, S.
Deposit date:2013-11-13
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A critical switch in the enzymatic properties of the Cid1 protein deciphered from its product-bound crystal structure.
Nucleic Acids Res., 42, 2014
4UD4
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BU of 4ud4 by Molmil
Structural Plasticity of Cid1 Provides a Basis for its RNA Terminal Uridylyl Transferase Activity
Descriptor: GLYCEROL, POLY(A) RNA POLYMERASE PROTEIN CID1
Authors:Yates, L.A, Durrant, B.P, Fleurdepine, S, Harlos, K, Norbury, C.J, Gilbert, R.J.C.
Deposit date:2014-12-07
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural plasticity of Cid1 provides a basis for its distributive RNA terminal uridylyl transferase activity.
Nucleic Acids Res., 43, 2015
4EP7
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BU of 4ep7 by Molmil
Functional implications from the Cid1 poly(U) polymerase crystal structure
Descriptor: MAGNESIUM ION, Poly(A) RNA polymerase protein cid1, URIDINE 5'-TRIPHOSPHATE
Authors:Munoz-Tello, P, Gabus, C, Thore, S.
Deposit date:2012-04-17
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2805 Å)
Cite:Functional implications from the cid1 poly(u) polymerase crystal structure.
Structure, 20, 2012
4FHW
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BU of 4fhw by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - MgGTP bound
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly(A) RNA polymerase protein cid1
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-06
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
4FHY
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BU of 4fhy by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - Mg 3'-dATP bound
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly(A) RNA polymerase protein cid1
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-07
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
4FHP
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BU of 4fhp by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - CaUTP bound
Descriptor: CALCIUM ION, GLYCEROL, Poly(A) RNA polymerase protein cid1, ...
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-06
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
4FHX
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BU of 4fhx by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - H336N mutant bound to MgATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly(A) RNA polymerase protein cid1
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-07
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
4FHV
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BU of 4fhv by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - MgCTP bound
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly(A) RNA polymerase protein cid1
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-06
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
4FH3
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BU of 4fh3 by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity
Descriptor: Poly(A) RNA polymerase protein cid1
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-05
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
4FH5
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BU of 4fh5 by Molmil
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - MgUTP bound
Descriptor: MAGNESIUM ION, Poly(A) RNA polymerase protein cid1, URIDINE 5'-TRIPHOSPHATE
Authors:Lunde, B.M, Magler, I, Meinhart, A.
Deposit date:2012-06-05
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
Nucleic Acids Res., 40, 2012
3EBL
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BU of 3ebl by Molmil
Crystal Structure of Rice GID1 complexed with GA4
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A4, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-08-28
Release date:2008-11-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
3ED1
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BU of 3ed1 by Molmil
Crystal Structure of Rice GID1 complexed with GA3
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A3, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-09-02
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
8XBS
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BU of 8xbs by Molmil
C. elegans apo-SID1 structure
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gong, D.S.
Deposit date:2023-12-07
Release date:2024-06-05
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Structural basis for double-stranded RNA recognition by SID1.
Nucleic Acids Res., 52, 2024
8XC1
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BU of 8xc1 by Molmil
C. elegans SID1 in complex with dsRNA
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gong, D.S.
Deposit date:2023-12-07
Release date:2024-06-05
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Structural basis for double-stranded RNA recognition by SID1.
Nucleic Acids Res., 52, 2024
2JRZ
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BU of 2jrz by Molmil
Solution structure of the Bright/ARID domain from the human JARID1C protein.
Descriptor: Histone demethylase JARID1C
Authors:Koehler, C, Bishop, S, Dowler, E.F, Diehl, A, Schmieder, P, Leidert, M, Sundstrom, M, Arrowsmith, C.H, Wiegelt, J, Edwards, A, Oschkinat, H, Ball, L.J, Structural Genomics Consortium (SGC)
Deposit date:2007-06-29
Release date:2007-07-10
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Backbone and sidechain 1H, 13C and 15N resonance assignments of the Bright/ARID domain from the human JARID1C (SMCX) protein.
Biomol.Nmr Assign., 2, 2008
4XOH
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BU of 4xoh by Molmil
Mechanistic insights into anchorage of the contractile ring from yeast to humans
Descriptor: Division mal foutue 1 protein
Authors:Chen, Z, Wu, J.-Q, Wang, J, Guan, R, Sun, L, Lee, I.-J, Liu, Y, Chen, M.
Deposit date:2015-01-16
Release date:2015-07-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Mechanistic insights into the anchorage of the contractile ring by anillin and mid1
Dev.Cell, 33, 2015
7WUG
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BU of 7wug by Molmil
GID subcomplex: Gid12 bound Substrate Receptor Scaffolding module
Descriptor: Glucose-induced degradation protein 8, HLJ1_G0042170.mRNA.1.CDS.1, Vacuolar import and degradation protein 24, ...
Authors:Qiao, S, Cheng, J.D, Schulman, B.A.
Deposit date:2022-02-08
Release date:2022-06-08
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation.
Nat Commun, 13, 2022
7VGW
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BU of 7vgw by Molmil
Yeast gid10 with Pro-peptide
Descriptor: BJ4_G0041530.mRNA.1.CDS.1
Authors:Shin, J.S, Park, S.H, Kim, L, Heo, J, Song, H.K.
Deposit date:2021-09-19
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of yeast Gid10 in complex with Pro/N-degron.
Biochem.Biophys.Res.Commun., 582, 2021
7Y63
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BU of 7y63 by Molmil
ApoSIDT2-pH7.4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SID1 transmembrane family member 2, ...
Authors:Gong, D.S.
Deposit date:2022-06-18
Release date:2023-06-21
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structural insight into the human SID1 transmembrane family member 2 reveals its lipid hydrolytic activity.
Nat Commun, 14, 2023
7Y68
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BU of 7y68 by Molmil
SIDT2-pH5.5 plus miRNA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SID1 transmembrane family member 2, ...
Authors:Gong, D.S.
Deposit date:2022-06-18
Release date:2023-06-21
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Structural insight into the human SID1 transmembrane family member 2 reveals its lipid hydrolytic activity.
Nat Commun, 14, 2023
7Y69
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BU of 7y69 by Molmil
ApoSIDT2-pH5.5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SID1 transmembrane family member 2, ...
Authors:Gong, D.S.
Deposit date:2022-06-18
Release date:2023-06-21
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural insight into the human SID1 transmembrane family member 2 reveals its lipid hydrolytic activity.
Nat Commun, 14, 2023
5IM8
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BU of 5im8 by Molmil
Solution Structure of the Microtubule-Targeting COS Domain of MID1
Descriptor: E3 ubiquitin-protein ligase Midline-1
Authors:Wright, K.M, Du, H, Dagnachew, M, Massiah, M.A.
Deposit date:2016-03-05
Release date:2016-07-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the microtubule-targeting COS domain of MID1.
Febs J., 283, 2016
5FPL
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BU of 5fpl by Molmil
Crystal structure of human JARID1B in complex with CCT363901
Descriptor: 1,2-ETHANEDIOL, 8-[4-(2-azanylethyl)pyrazol-1-yl]-3H-pyrido[3,4-d]pyrimidin-4-one, DIMETHYL SULFOXIDE, ...
Authors:Srikannathasan, V, Yann-Vai, L.B, Nowak, R, Johansson, C, Gileadi, C, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Brennan, P, Huber, K, Oppermann, U.
Deposit date:2015-12-02
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:8-Substituted Pyrido[3,4-D]Pyrimidin-4(3H)-One Derivatives as Potent, Cell Permeable, Kdm4 (Jmjd2) and Kdm5 (Jarid1) Histone Lysine Demethylase Inhibitors.
J.Med.Chem., 59, 2016

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PDB entries from 2024-09-18

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