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2G6Q	Crystal structure of ING2 PHD finger in complex with H3K4Me3 peptide Descriptor: H3K4Me3 peptide, Inhibitor of growth protein 2, ZINC ION Authors: Pena, P.V, Zhao, R, Kutateladze, T.G. Deposit date: 2006-02-24 Release date: 2006-07-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature, 442, 2006
2QIC	Crystal Structure of the ING1 PHD Finger in complex with a Histone H3K4ME3 peptide Descriptor: H3K4ME3 PEPTIDE, Inhibitor of growth protein 1, ZINC ION Authors: Pena, P.V, Champagne, K, Zhao, R, Kutateladze, T.G. Deposit date: 2007-07-03 Release date: 2008-05-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Histone H3K4me3 binding is required for the DNA repair and apoptotic activities of ING1 tumor suppressor. J.Mol.Biol., 380, 2008
3C6W	Crystal structure of the ING5 PHD finger in complex with H3K4me3 peptide Descriptor: H3K4me3 histone peptide, Inhibitor of growth protein 5, ZINC ION Authors: Champagne, K.S, Pena, P.V, Johnson, K, Kutateladze, T.G. Deposit date: 2008-02-05 Release date: 2008-06-03 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (1.75 Å) Cite: The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide. Proteins, 72, 2008
2K17	Solution structure of the TAF3 PHD domain in complex with a H3K4me3 peptide Descriptor: H3K4me3 peptide, Transcription initiation factor TFIID subunit 3, ZINC ION Authors: van Ingen, H, van Schaik, F.M.A, Wienk, H, Timmers, M, Boelens, R. Deposit date: 2008-02-22 Release date: 2008-07-15 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Recognition of the H3K4me3 mark by the TAF3-PHD finger To be Published
5IX1	Crystal structure of mouse Morc3 ATPase-CW cassette in complex with AMPPNP and H3K4me3 peptide Descriptor: MAGNESIUM ION, MORC family CW-type zinc finger protein 3, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Li, S, Du, J, Patel, D.J. Deposit date: 2016-03-23 Release date: 2016-08-17 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin Proc.Natl.Acad.Sci.USA, 113, 2016
4UY4	1.86 A structure of human Spindlin-4 protein in complex with histone H3K4me3 peptide Descriptor: GLYCEROL, HISTONE H3K4ME3, SPINDLIN-4 Authors: Talon, R, Gileadi, C, Johansson, C, Burgess-Brown, N, Shrestha, L, von Delft, F, Krojer, T, Fairhead, M, Bountra, C, Arrowsmith, C.H, Edwards, A, Oppermann, U. Deposit date: 2014-08-28 Release date: 2014-09-24 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.862 Å) Cite: 1.86 A Structure of Human Spindlin-4 Protein in Complex with Histone H3K4Me3 Peptide To be Published
6J2P	Crystal structure of Saccharomyces cerevisiae Spp1 in complex with H3K4me3 Descriptor: COMPASS component SPP1, Histone H3, ZINC ION Authors: He, C, Li, F. Deposit date: 2019-01-02 Release date: 2019-09-11 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural basis for histone H3K4me3 recognition by the N-terminal domain of the PHD finger protein Spp1. Biochem.J., 476, 2019
6LQE	Crystal structure of Arabidopsis ARID5 PHD finger in complex with H3K4me3 peptide Descriptor: 15-mer peptide from Histone H3.2, AT-rich interactive domain-containing protein 4, ZINC ION Authors: Liu, R, Du, J. Deposit date: 2020-01-13 Release date: 2020-06-03 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Plant Cell, 32, 2020
6LQF	Crystal structure of Arabidopsis ARID5 ARID-PHD cassette in complex with H3K4me3 peptide and DNA Descriptor: 15-mer peptide from Histone H3.2, AT-rich interactive domain-containing protein 4, DNA (5'-D(*TP*TP*TP*AP*GP*AP*TP*CP*TP*AP*AP*A)-3'), ... Authors: Liu, R, Du, J. Deposit date: 2020-01-13 Release date: 2020-06-03 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Plant Cell, 32, 2020
5YKO	Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide Descriptor: H3(1-10)K4me3 peptide, N-OXALYLGLYCINE, NICKEL (II) ION, ... Authors: Yang, Z, Du, J. Deposit date: 2017-10-15 Release date: 2017-12-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases. Plant Cell, 30, 2018
5ZNP	Crystal structure of PtSHL in complex with an H3K4me3 peptide Descriptor: 15-mer peptide from Histone H3.2, SHORT LIFE family protein, ZINC ION Authors: Lv, X, Du, J. Deposit date: 2018-04-10 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL. Nat Commun, 9, 2018
2VNF	MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4 Descriptor: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, HISTONE H3, ... Authors: Palacios, A, Munoz, I.G, Pantoja-Uceda, D, Marcaida, M.J, Torres, D, Martin-Garcia, J.M, Luque, I, Montoya, G, Blanco, F.J. Deposit date: 2008-02-04 Release date: 2008-04-01 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Molecular Basis of Histone H3K4Me3 Recognition by Ing4 J.Biol.Chem., 283, 2008
7CNA	Crystal structure of Spindlin1/C11orf84 complex bound to histone H3K4me3K9me3 peptide Descriptor: ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-M3L-SER-GLY, ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-M3L-SER-THR, BENZAMIDINE, ... Authors: Qian, C.M. Deposit date: 2020-07-30 Release date: 2021-01-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural mechanism of bivalent histone H3K4me3K9me3 recognition by the Spindlin1/C11orf84 complex in rRNA transcription activation. Nat Commun, 12, 2021
2PNX	The PHD finger of ING4 in complex with an H3K4Me3 histone peptide Descriptor: H3K4Me3 peptide, Inhibitor of growth protein 4, ZINC ION Authors: Champagne, K.S, Johnson, K, Kutateladze, T.G. Deposit date: 2007-04-25 Release date: 2008-04-15 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (1.8 Å) Cite: ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation Mol.Cell, 33, 2009
5WLE	Crystal structure of the PPS PHD finger in complex with H3K4me3 Descriptor: H3K4me3 Peptide, Protein partner of snf, isoform A, ... Authors: Klein, B.J, Kutateladze, T.G. Deposit date: 2017-07-26 Release date: 2017-10-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.952 Å) Cite: A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO. Structure, 25, 2017
4PL6	Structure of the chromodomain of MRG2 in complex with H3K4me3 Descriptor: At1g02740, H3K4me3 Authors: Liu, Y.C, Huang, Y. Deposit date: 2014-05-16 Release date: 2015-07-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.681 Å) Cite: Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression. Plos Genet., 10, 2014
5ME8	N-terminal domain of the human tumor suppressor ING5 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, Inhibitor of growth protein 5 Authors: Roversi, P, Blanco, F.J, Rojas, A.L, Buitrago, J.A.R. Deposit date: 2016-11-14 Release date: 2018-03-14 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (3.2 Å) Cite: The Tumor Suppressor ING5 Is a Dimeric, Bivalent Recognition Molecule of the Histone H3K4me3 Mark. J.Mol.Biol., 431, 2019
5MTO	N-terminal domain of the human tumor suppressor ING5 C19S mutant Descriptor: Inhibitor of growth protein 5, SODIUM ION, SULFATE ION Authors: Ormaza, G, Buitrago, J.A.R, Roversi, P, Rojas, A.L, Blanco, F.J. Deposit date: 2017-01-10 Release date: 2018-02-28 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The Tumor Suppressor ING5 Is a Dimeric, Bivalent Recognition Molecule of the Histone H3K4me3 Mark. J.Mol.Biol., 431, 2019
5YKN	crystal structure of Arabidopsis thaliana JMJ14 catalytic domain Descriptor: NICKEL (II) ION, Probable lysine-specific demethylase JMJ14, ZINC ION Authors: Yang, Z, Du, J. Deposit date: 2017-10-15 Release date: 2017-12-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases. Plant Cell, 30, 2018
2FUI	NMR solution structure of PHD finger fragment of human BPTF in free state Descriptor: bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-26 Release date: 2006-07-11 Last modified: 2024-11-13 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FUU	NMR solution structure of the PHD domain from the human BPTF in complex with H3(1-15)K4me3 peptide Descriptor: Histone H3, ZINC ION, bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-27 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
5IX2	Crystal structure of mouse Morc3 ATPase-CW cassette in complex with AMPPNP and unmodified H3 peptide Descriptor: MAGNESIUM ION, MORC family CW-type zinc finger protein 3, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Li, S, Du, J, Patel, D.J. Deposit date: 2016-03-23 Release date: 2016-08-17 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin Proc.Natl.Acad.Sci.USA, 113, 2016
5ZNR	Crystal structure of PtSHL in complex with an H3K27me3 peptide Descriptor: 17-mer peptide from Histone H3.2, SHORT LIFE family protein, SULFATE ION, ... Authors: Lv, X, Du, J. Deposit date: 2018-04-10 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.202 Å) Cite: Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL. Nat Commun, 9, 2018
2F6J	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state Descriptor: ZINC ION, bromodomain PHD finger transcription factor, histone H3, ... Authors: Li, H, Patel, D.J. Deposit date: 2005-11-29 Release date: 2006-07-11 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
5WXH	Crystal structure of TAF3 PHD finger bound to H3K4me3 Descriptor: Histone H3K4me3, Transcription initiation factor TFIID subunit 3, ZINC ION Authors: Zhao, S, Huang, J, Li, H. Deposit date: 2017-01-07 Release date: 2017-08-16 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (1.297 Å) Cite: Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology Proc. Natl. Acad. Sci. U.S.A., 114, 2017

 

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