Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DP6
DownloadVisualize
BU of 1dp6 by Molmil
OXYGEN-BINDING COMPLEX OF FIXL HEME DOMAIN
Descriptor: FIXL PROTEIN, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gong, W, Hao, B, Chan, M.K.
Deposit date:1999-12-23
Release date:2000-12-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:New mechanistic insights from structural studies of the oxygen-sensing domain of Bradyrhizobium japonicum FixL.
Biochemistry, 39, 2000
1NWZ
DownloadVisualize
BU of 1nwz by Molmil
PYP Ultra-high resolution structure of a Bacterial Photoreceptor
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Getzoff, E.D, Gutwin, K.N, Genick, U.K.
Deposit date:2003-02-07
Release date:2003-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.82 Å)
Cite:Anticipatory active-site motions and chromophore distortions prime photoreceptor PYP for light activation
Nat.Struct.Biol., 10, 2003
1D7E
DownloadVisualize
BU of 1d7e by Molmil
CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Van Aalten, D.M.F, Crielaard, W, Hellingwerf, K.J, Joshua-Tor, L.
Deposit date:1999-10-17
Release date:2000-03-31
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Conformational substates in different crystal forms of the photoactive yellow protein--correlation with theoretical and experimental flexibility.
Protein Sci., 9, 2000
1ODV
DownloadVisualize
BU of 1odv by Molmil
Photoactive yellow protein 1-25 deletion mutant
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Vreede, J, Van Der horst, M.A, Hellingwerf, K.J, Crielaard, W, Van Aalten, D.M.F.
Deposit date:2003-03-14
Release date:2003-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Pas Domains.Common Structure and Common Flexibility
J.Biol.Chem., 278, 2003
1D06
DownloadVisualize
BU of 1d06 by Molmil
STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, nitrogen fixation regulatory protein fixL
Authors:Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
Deposit date:1999-09-09
Release date:2000-03-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1OTE
DownloadVisualize
BU of 1ote by Molmil
E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 110K
Descriptor: 4'-HYDROXYCINNAMIC ACID, photoactive yellow protein, PYP
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1OTA
DownloadVisualize
BU of 1ota by Molmil
E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1F98
DownloadVisualize
BU of 1f98 by Molmil
CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT T50V
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D.
Deposit date:2000-07-07
Release date:2000-07-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein.
Biochemistry, 39, 2000
1OTB
DownloadVisualize
BU of 1otb by Molmil
WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1F9I
DownloadVisualize
BU of 1f9i by Molmil
CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT Y42F
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D.
Deposit date:2000-07-10
Release date:2000-07-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein.
Biochemistry, 39, 2000
1OT6
DownloadVisualize
BU of 1ot6 by Molmil
CRYOTRAPPED CRYSTAL STRUCTURE OF THE E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN UNDER CONTINUOUS ILLUMINATION AT 110K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1OTD
DownloadVisualize
BU of 1otd by Molmil
STRONG HYDROGEN BONDS IN PHOTOACTIVE YELLOW PROTEIN AND THEIR ROLE IN ITS PHOTOCYCLE
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1OT9
DownloadVisualize
BU of 1ot9 by Molmil
CRYOTRAPPED STATE IN WILD TYPE PHOTOACTIVE YELLOW PROTEIN, INDUCED WITH CONTINUOUS ILLUMINATION AT 110K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1OTI
DownloadVisualize
BU of 1oti by Molmil
E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Anderson, S, Crosson, S, Moffat, K.
Deposit date:2003-03-21
Release date:2004-05-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Short hydrogen bonds in photoactive yellow protein.
Acta Crystallogr.,Sect.D, 60, 2004
1DP8
DownloadVisualize
BU of 1dp8 by Molmil
CRYSTAL STRUCTURE OF THE NITRIC OXIDE BOUND FIXL HEME DOMAIN
Descriptor: FIXL PROTEIN, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gong, W, Hao, B, Chan, M.K.
Deposit date:1999-12-24
Release date:2000-12-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:New mechanistic insights from structural studies of the oxygen-sensing domain of Bradyrhizobium japonicum FixL.
Biochemistry, 39, 2000
1DRM
DownloadVisualize
BU of 1drm by Molmil
CRYSTAL STRUCTURE OF THE LIGAND FREE BJFIXL HEME DOMAIN
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL
Authors:Gong, W, Hao, B, Mansy, S.S, Gonzalez, G, Gilles-Gonzalez, M.A, Chan, M.K.
Deposit date:2000-01-06
Release date:2000-01-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a biological oxygen sensor: a new mechanism for heme-driven signal transduction.
Proc.Natl.Acad.Sci.USA, 95, 1998
1DP9
DownloadVisualize
BU of 1dp9 by Molmil
CRYSTAL STRUCTURE OF IMIDAZOLE-BOUND FIXL HEME DOMAIN
Descriptor: FIXL PROTEIN, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gong, W, Hao, B, Chan, M.K.
Deposit date:1999-12-24
Release date:2000-12-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:New mechanistic insights from structural studies of the oxygen-sensing domain of Bradyrhizobium japonicum FixL.
Biochemistry, 39, 2000
1EW0
DownloadVisualize
BU of 1ew0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
Descriptor: FIXL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
Deposit date:2000-04-21
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1T18
DownloadVisualize
BU of 1t18 by Molmil
Early intermediate IE1 from time-resolved crystallography of the E46Q mutant of PYP
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
Deposit date:2004-04-15
Release date:2005-01-18
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1TS6
DownloadVisualize
BU of 1ts6 by Molmil
Structure of the pB2 intermediate from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2021-07-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TS8
DownloadVisualize
BU of 1ts8 by Molmil
Structure of the pR cis planar intermediate from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1T19
DownloadVisualize
BU of 1t19 by Molmil
Early intermediate IE2 from time-resolved crystallography of the E46Q mutant of PYP
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
Deposit date:2004-04-15
Release date:2005-01-18
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1T1A
DownloadVisualize
BU of 1t1a by Molmil
Late intermediate IL1 from time-resolved crystallography of the E46Q mutant of PYP
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
Deposit date:2004-04-15
Release date:2005-01-18
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1TS7
DownloadVisualize
BU of 1ts7 by Molmil
Structure of the pR cis wobble and pR E46Q intermediates from time-resolved Laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
Deposit date:2004-06-21
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1S4R
DownloadVisualize
BU of 1s4r by Molmil
Structure of a reaction intermediate in the photocycle of PYP extracted by a SVD-driven analysis
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Schmidt, M, Pahl, R, Srajer, V, Anderson, S, Ren, Z, Ihee, H, Rajagopal, S, Moffat, K.
Deposit date:2004-01-17
Release date:2004-04-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data
Proc.Natl.Acad.Sci.USA, 101, 2004

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon