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Yorodumi- PDB-6u82: Crystal Structure of the Double Homeodomain of DUX4 in Complex wi... -
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-Basic information
Entry | Database: PDB / ID: 6u82 | ||||||
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Title | Crystal Structure of the Double Homeodomain of DUX4 in Complex with a DNA aptamer containing bulge and loop | ||||||
Components |
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Keywords | DNA BINDING PROTEIN/DNA / DUX tandem homeodomains / DNA BINDING PROTEIN-DNA complex | ||||||
Function / homology | Function and homology information negative regulation of G0 to G1 transition / Zygotic genome activation (ZGA) / RNA polymerase II transcription regulatory region sequence-specific DNA binding / sequence-specific double-stranded DNA binding / DNA-binding transcription activator activity, RNA polymerase II-specific / nuclear membrane / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / negative regulation of cell population proliferation ...negative regulation of G0 to G1 transition / Zygotic genome activation (ZGA) / RNA polymerase II transcription regulatory region sequence-specific DNA binding / sequence-specific double-stranded DNA binding / DNA-binding transcription activator activity, RNA polymerase II-specific / nuclear membrane / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / negative regulation of cell population proliferation / apoptotic process / nucleolus / regulation of transcription by RNA polymerase II / Golgi apparatus / positive regulation of transcription by RNA polymerase II / nucleoplasm / nucleus / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.21 Å | ||||||
Authors | Shi, K. / Aihara, H. | ||||||
Funding support | United States, 1items
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Citation | Journal: Faseb J. / Year: 2020 Title: DNA aptamers against the DUX4 protein reveal novel therapeutic implications for FSHD. Authors: Klingler, C. / Ashley, J. / Shi, K. / Stiefvater, A. / Kyba, M. / Sinnreich, M. / Aihara, H. / Kinter, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6u82.cif.gz | 249.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6u82.ent.gz | 167.7 KB | Display | PDB format |
PDBx/mmJSON format | 6u82.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/u8/6u82 ftp://data.pdbj.org/pub/pdb/validation_reports/u8/6u82 | HTTPS FTP |
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-Related structure data
Related structure data | 6u81C 6e8cS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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