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Yorodumi- PDB-4f0u: X-Ray Crystal Structure of Allophycocyanin from Synechococcus elo... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4f0u | ||||||
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Title | X-Ray Crystal Structure of Allophycocyanin from Synechococcus elongatus PCC 7942 | ||||||
Components |
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Keywords | PHOTOSYNTHESIS / Component of the phycobilisome / photosynthetic antenna complex | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Synechococcus elongatus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.5 Å | ||||||
Authors | Marx, A. / Adir, N. | ||||||
Citation | Journal: Biochim.Biophys.Acta / Year: 2013 Title: Allophycocyanin and phycocyanin crystal structures reveal facets of phycobilisome assembly. Authors: Marx, A. / Adir, N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4f0u.cif.gz | 190.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4f0u.ent.gz | 162.4 KB | Display | PDB format |
PDBx/mmJSON format | 4f0u.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/f0/4f0u ftp://data.pdbj.org/pub/pdb/validation_reports/f0/4f0u | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 17308.521 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Synechococcus elongatus (bacteria) / Strain: PCC 7942 / References: UniProt: Q31RG0 #2: Protein | Mass: 17422.750 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Synechococcus elongatus (bacteria) / Strain: PCC 7942 / References: UniProt: Q31RG1 #3: Chemical | ChemComp-CYC / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.98 Å3/Da / Density % sol: 58.79 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8 Details: 30% PEG 4000; 50mM Tris pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID14-1 |
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Detector | Type: ADSC QUANTUM 210 / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.5→48 Å / Num. obs: 42702 / % possible obs: 98.8 % / Redundancy: 2.9 % / Rmerge(I) obs: 0.081 / Net I/σ(I): 9.3 |
Reflection shell | Resolution: 2.5→2.64 Å / Redundancy: 2.8 % / Rmerge(I) obs: 0.455 / Mean I/σ(I) obs: 2.3 / % possible all: 98.9 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.5→48 Å
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.5→48 Å
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