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Yorodumi- PDB-1cpc: ISOLATION, CRYSTALLIZATION, CRYSTAL STRUCTURE ANALYSIS AND REFINE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cpc | ||||||
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Title | ISOLATION, CRYSTALLIZATION, CRYSTAL STRUCTURE ANALYSIS AND REFINEMENT OF CONSTITUTIVE C-PHYCOCYANIN FROM THE CHROMATICALLY ADAPTING CYANOBACTERIUM FREMYELLA DIPLOSIPHON AT 1.66 ANGSTROMS RESOLUTION | ||||||
Components |
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Keywords | LIGHT HARVESTING PROTEIN | ||||||
Function / homology | Function and homology information : / phycobilisome / plasma membrane-derived thylakoid membrane / photosynthesis Similarity search - Function | ||||||
Biological species | Fremyella diplosiphon (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.66 Å | ||||||
Authors | Duerring, M. / Schmidt, G.B. / Huber, R. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1991 Title: Isolation, crystallization, crystal structure analysis and refinement of constitutive C-phycocyanin from the chromatically adapting cyanobacterium Fremyella diplosiphon at 1.66 A resolution. Authors: Duerring, M. / Schmidt, G.B. / Huber, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cpc.cif.gz | 144.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cpc.ent.gz | 114.7 KB | Display | PDB format |
PDBx/mmJSON format | 1cpc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1cpc_validation.pdf.gz | 761.8 KB | Display | wwPDB validaton report |
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Full document | 1cpc_full_validation.pdf.gz | 788.6 KB | Display | |
Data in XML | 1cpc_validation.xml.gz | 19.8 KB | Display | |
Data in CIF | 1cpc_validation.cif.gz | 28.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cp/1cpc ftp://data.pdbj.org/pub/pdb/validation_reports/cp/1cpc | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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Unit cell |
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-Components
#1: Protein | Mass: 17243.271 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Fremyella diplosiphon (bacteria) / Genus: Microchaete / References: UniProt: P07122 #2: Protein | Mass: 17950.377 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Fremyella diplosiphon (bacteria) / Genus: Microchaete / References: UniProt: P07119 #3: Chemical | ChemComp-CYC / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.72 Å3/Da / Density % sol: 54.79 % | ||||||||||||||||||||
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Crystal grow | *PLUS pH: 5 / Method: vapor diffusion | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.66 Å / Num. obs: 70981 / Num. measured all: 176017 / Rmerge(I) obs: 0.089 |
Reflection shell | *PLUS Highest resolution: 1.66 Å / Lowest resolution: 1.75 Å / % possible obs: 29.1 % |
-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||
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Refinement | Rfactor Rwork: 0.181 / Highest resolution: 1.66 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.66 Å
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Refine LS restraints |
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Software | *PLUS Name: EREF / Classification: refinement | ||||||||||||
Refinement | *PLUS Lowest resolution: 8 Å / Rfactor Rwork: 0.181 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
Refine LS restraints | *PLUS Type: o_angle_d / Dev ideal: 2.33 |