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Yorodumi- PDB-2fow: THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11: THREE-DIMENSIONA... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2fow | ||||||
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Title | THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11: THREE-DIMENSIONAL STRUCTURE OF THE RNA-BOUND FORM OF THE PROTEIN, NMR, 26 STRUCTURES | ||||||
Components | RIBOSOMAL PROTEIN L11 | ||||||
Keywords | RIBOSOME / PROTEIN:RNA / THIOSTREPTON | ||||||
Function / homology | Function and homology information large ribosomal subunit rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / DNA binding Similarity search - Function | ||||||
Biological species | Geobacillus stearothermophilus (bacteria) | ||||||
Method | SOLUTION NMR / SUBSTRUCTURE DISTANCE GEOMETRY, SIMULATING ANNEALING | ||||||
Authors | Hinck, A.P. / Markus, M.A. / Huang, S. / Grzesiek, S. / Kustanovich, I. / Draper, D.E. / Torchia, D.A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1997 Title: The RNA binding domain of ribosomal protein L11: three-dimensional structure of the RNA-bound form of the protein and its interaction with 23 S rRNA. Authors: Hinck, A.P. / Markus, M.A. / Huang, S. / Grzesiek, S. / Kustonovich, I. / Draper, D.E. / Torchia, D.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2fow.cif.gz | 584.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2fow.ent.gz | 508 KB | Display | PDB format |
PDBx/mmJSON format | 2fow.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fo/2fow ftp://data.pdbj.org/pub/pdb/validation_reports/fo/2fow | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8152.554 Da / Num. of mol.: 1 / Fragment: C-TERMINAL DOMAIN, 75 RESIDUES / Mutation: F1M Source method: isolated from a genetically manipulated source Details: STRUCTURE OF THE PROTEIN IN THIS ENTRY WAS DETERMINED AS A 1\:1 COMPLEX WITH ITS TARGET RNA OF 58 NUCLEOTIDES, BASES 1051 - 1108 OF THE E. COLI SEQUENCE Source: (gene. exp.) Geobacillus stearothermophilus (bacteria) Cell line: BL21 / Plasmid: BL21 / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: P56210 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions | pH: 6.1 / Temperature: 320 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
Software |
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NMR software |
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Refinement | Method: SUBSTRUCTURE DISTANCE GEOMETRY, SIMULATING ANNEALING Software ordinal: 1 Details: SUBSTRUCTURE DISTANCE GEOMETRY/ SIMULATED ANNEALING PROTOCOL | ||||||||||||
NMR ensemble | Conformer selection criteria: NOE VIOL < 0.3 ANGSTROMS DIHEDRAL VIOL < 3 DEGREES; 3JHNHA COUPLING VIOLATED < 1.5 HZ Conformers calculated total number: 50 / Conformers submitted total number: 26 |