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Yorodumi- PDB-1jmw: Propagating Conformational Changes Over Long (And Short) Distances -
+Open data
-Basic information
Entry | Database: PDB / ID: 1jmw | ||||||
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Title | Propagating Conformational Changes Over Long (And Short) Distances | ||||||
Components | methyl-accepting chemotaxis protein II | ||||||
Keywords | SIGNALING PROTEIN / Chemotaxis / Bacterial Chemotactic Receptor | ||||||
Function / homology | Function and homology information chemotaxis / transmembrane signaling receptor activity / signal transduction / plasma membrane Similarity search - Function | ||||||
Biological species | Salmonella typhimurium (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.9 Å | ||||||
Authors | Koshland Jr., D.E. / Yu, E.W. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2001 Title: Propagating conformational changes over long (and short) distances in proteins. Authors: Yu, E.W. / Koshland Jr., D.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jmw.cif.gz | 44.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jmw.ent.gz | 31.5 KB | Display | PDB format |
PDBx/mmJSON format | 1jmw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jm/1jmw ftp://data.pdbj.org/pub/pdb/validation_reports/jm/1jmw | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 16350.229 Da / Num. of mol.: 1 / Fragment: Ligand Binding Domain / Mutation: S68A Source method: isolated from a genetically manipulated source Source: (gene. exp.) Salmonella typhimurium (bacteria) / Plasmid: pMK 155 / Production host: Escherichia coli (E. coli) / Strain (production host): XL1 Blue / References: UniProt: P02941 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.22 Å3/Da / Density % sol: 44.64 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8 Details: PEG 6000, sodium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: SSRL / Beamline: BL7-1 / Wavelength: 1.08 Å |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Jan 19, 1999 |
Radiation | Monochromator: Si 111 CHANNEL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.08 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→8 Å / Num. all: 22734 / Num. obs: 12078 / % possible obs: 97 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 1 |
Reflection shell | Resolution: 1.9→8 Å / % possible all: 97 |
Reflection | *PLUS Rmerge(I) obs: 0.097 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.9→8 Å / σ(F): 1 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 1.9→8 Å
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 8 Å / σ(F): 1 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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