[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 74 items for (author: snijder & j)

EMDB-18149:
GBP1 bound by 14-3-3sigma
Method: single particle / : Pfleiderer MM, Liu X, Fisch D, Anastasakou E, Frickel EM, Galej WP

PDB-8q4l:
GBP1 bound by 14-3-3sigma
Method: single particle / : Pfleiderer MM, Liu X, Fisch D, Anastasakou E, Frickel EM, Galej WP

EMDB-16882:
Human Coronavirus HKU1 spike glycoprotein
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17076:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17077:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (1-up state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17078:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17079:
Human Coronavirus HKU1 W89A spike glycoprotein incubated with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17080:
Local refinement of the Human Coronavirus HKU1 spike glycoprotein
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17081:
Local refinement of the Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17082:
Local refinement of the Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
Method: single particle / : Drulyte I, Hurdiss DL

EMDB-17083:
Local refinement of the Human Coronavirus HKU1 W89A spike glycoprotein incubated with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Drulyte I, Hurdiss DL

PDB-8ohn:
Human Coronavirus HKU1 spike glycoprotein
Method: single particle / : Pronker MF, Hurdiss DL

PDB-8opm:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
Method: single particle / : Pronker MF, Creutznacher R, Hurdiss DL

PDB-8opn:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (1-up state)
Method: single particle / : Pronker MF, Creutznacher R, Hurdiss DL

PDB-8opo:
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
Method: single particle / : Pronker MF, Creutznacher R, Hurdiss DL

EMDB-16144:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL, Drulyte I

PDB-8bon:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL

EMDB-13549:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 46C12 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

EMDB-13550:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

EMDB-13563:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

EMDB-13564:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 37F1 antibody Fab fragment
Method: single particle / : Hesketh EL, Townend S, Ranson NA, Hurdiss DL

PDB-7pnm:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 46C12 antibody Fab fragment
Method: single particle / : Hurdiss DL

PDB-7pnq:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
Method: single particle / : Hurdiss DL

PDB-7po5:
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Method: single particle / : Hurdiss DL

EMDB-12798:
Hexameric coxsackievirus B3 2C protein in complex with S-fluoxetine
Method: single particle / : Hurdiss DL, Forster F

EMDB-21705:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

PDB-6wkn:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-11514:
Molecular pore spanning the double membranes of murine coronaviral (MHV-A59) replication organelles.
Method: subtomogram averaging / : Barcena M, Wolff G

EMDB-11515:
Molecular pore spanning the double membranes of a mutant murine coronaviral (MHV-A59 GFP-nsp3) replication organelles.
Method: subtomogram averaging / : Barcena M, Wolff G

EMDB-10870:
Cohesin complex with loader gripping DNA
Method: single particle / : Higashi TL, Eickhoff P, Sousa JS, Costa A, Uhlmann F

EMDB-10930:
Cohesin complex with loader gripping DNA
Method: single particle / : Higashi TL, Eickhoff P, Sousa JS, Costa A, Uhlmann F

PDB-6yuf:
Cohesin complex with loader gripping DNA
Method: single particle / : Higashi TL, Eickhoff P, Sousa JS, Costa A, Uhlmann F

EMDB-10676:
Human Coronavirus HKU1 Haemagglutinin-Esterase
Method: single particle / : Hurdiss DL, Drulyte I

PDB-6y3y:
Human Coronavirus HKU1 Haemagglutinin-Esterase
Method: single particle / : Hurdiss DL, Drulyte I, Pronker MF

EMDB-10337:
XPF-ERCC1 Cryo-EM Structure, Apo-form
Method: single particle / : Jones ML, Briggs DC, McDonald NQ

EMDB-10338:
XPF-ERCC1 Cryo-EM Structure, DNA-Bound form
Method: single particle / : Jones ML, Briggs DC, McDonald NQ

PDB-6sxa:
XPF-ERCC1 Cryo-EM Structure, Apo-form
Method: single particle / : Jones ML, Briggs DC, McDonald NQ

PDB-6sxb:
XPF-ERCC1 Cryo-EM Structure, DNA-Bound form
Method: single particle / : Jones ML, Briggs DC, McDonald NQ

EMDB-20584:
A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Hendra virus infection
Method: single particle / : Dang HV, Chan YP, Park YJ, Snijder J, Da Silva SC, Vu B, Yan L, Feng YR, Rockx B, Geisbert T, Mire CE, Broder CB, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6tys:
A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Hendra virus infection
Method: single particle / : Dang HV, Chan YP, Park YJ, Snijder J, Da Silva SC, Vu B, Yan L, Feng YR, Rockx B, Geisbert T, Mire CE, Broder CB, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-0350:
Induction of Potent Neutralizing Antibody Responses by a Designed Protein Nanoparticle Vaccine for Respiratory Syncytial Virus
Method: single particle / : Marcandalli J, Fiala B, Ols S, Perotti M, van der Schueren W, Snijder S, Hodge E, Benhaim M, Ravichandran R, Carter L, Sheffler W, Brunner L, Lawrenz M, Dubois P, Lanzavecchia A, Sallusto F, Lee KK, Veesler D, Correnti CE, Stewart LJ, Baker D, Lore K, Perez L, King NP

EMDB-0401:
MERS-CoV complex with human neutralizing LCA60 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-0402:
MERS-CoV S complex with human neutralizing LCA60 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-0403:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-0404:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb3:
MERS-CoV complex with human neutralizing LCA60 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb4:
MERS-CoV S complex with human neutralizing LCA60 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb6:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb7:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-9294:
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map
Method: single particle / : Borst AJ, Weidle CE, Gray MD, Frenz B, Snijder J, Joyce MG, Georgiev IS, Stewart-Jones GBE, Kwong PD, McGuire AT, DiMaio F, Stamatatos L, Pancera M, Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more