[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 118 items for (author: lander & gc)

EMDB-43160:
Human transthyretin covalently modified with A2-derived stilbene in the compressed conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-41788:
S. cerevisiae Pex1/Pex6 with 1 mM ATP
Method: single particle / : Gardner BM, Richardson CD, Martin A, Lander GC, Chowdhury S

EMDB-29280:
Cas1-Cas2/3 integrase and IHF bound to CRISPR leader, repeat and foreign DNA
Method: single particle / : Santiago-Frangos A, Henriques WS, Wiegand T, Gauvin C, Buyukyoruk M, Neselu K, Eng ET, Lander GC, Wiedenheft B

EMDB-29070:
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(UGA-TL)
Method: single particle / : Hirschi M, Kuhle B, Doerfel L, Schimmel P, Lander G

EMDB-27269:
Cryo-EM structure of human DELE1 in oligomeric form
Method: single particle / : Yang J, Lander GC

EMDB-25730:
Cryo-EM structure of full-length hepatitis C virus E1E2 glycoprotein in complex with AR4A, AT12009, and IGH505 Fabs
Method: single particle / : Torrents de la Pena A, Ward AB, Eshun-Wilson L, Lander GC

EMDB-27578:
nsEM map of E1E2 AMS0232 glycoprotein in complex with monoclonal antibody AR4A
Method: single particle / : Torrents de la Pena A, Ward AB

EMDB-26310:
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU)
Method: single particle / : Hirschi M, Kuhle B, Doerfel L, Schimmel P, Lander G

EMDB-26311:
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(GCU-TL)
Method: single particle / : Hirschi M, Kuhle B, Doerfel L, Schimmel P, Lander G

EMDB-27012:
Cereblon-DDB1 in the Apo form
Method: single particle / : Watson ER, Lander GC

EMDB-27234:
Cereblon~DDB1 bound to CC-92480 with DDB1 in the linear conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27235:
Cereblon~DDB1 bound to CC-92480 with DDB1 in the twisted conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27236:
Cereblon~DDB1 bound to CC-92480 with DDB1 in the hinged conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27237:
Cereblon~DDB1 in the Apo form with DDB1 in the hinged conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27238:
Cereblon-DDB1 in the Apo form with DDB1 in the twisted conformation
Method: single particle / : Watson ER, Lander GC

EMDB-27239:
Cereblon bound to CC-92480, Focused Refinement
Method: single particle / : Watson ER, Lander GC

EMDB-27240:
Cereblon-DDB1 bound to CC-92480 and Ikaros ZF1-2-3
Method: single particle / : Watson ER, Lander GC

EMDB-27241:
Cereblon~DDB1 bound to Iberdomide and Ikaros ZF1-2-3
Method: single particle / : Watson ER, Lander GC

EMDB-27242:
Cereblon~DDB1 bound to Pomalidomide
Method: single particle / : Watson ER, Lander GC

EMDB-25502:
Yeast Lon (PIM1) with endogenous substrate
Method: single particle / : Yang J, Song AS, Wiseman RL, Lander GC

EMDB-24795:
Mouse heavy chain apoferritin determined in presence of 1.66% glycerol.
Method: single particle / : Basanta B, Hirschi M, Lander GC

EMDB-24796:
Mouse heavy chain apoferritin determined in presence of 20% glycerol (200keV)
Method: single particle / : Basanta B, Hirschi M, Lander GC

EMDB-24797:
Mouse heavy chain apoferritin determined in presence of 20% glycerol (300keV)
Method: single particle / : Hirschi M, Basanta B, Lander GC

EMDB-24798:
Rabbit muscle aldolase determined in presence of 20% v/v glycerol
Method: single particle / : Basanta B, Hirschi M, Lander GC

EMDB-24799:
Rabbit muscle aldolase determined in the presence of 20% v/v glycerol.
Method: single particle / : Basanta B, Hirschi M, Lander GC

EMDB-24850:
Compressed conformation of nighttime state KaiC
Method: single particle / : Sandate CR, Swan JA, Partch CL, Lander GC

EMDB-24851:
Extended conformation of nighttime state KaiC
Method: single particle / : Sandate CR, Swan JA, Partch CL, Lander GC

EMDB-24852:
Extended conformation of daytime state KaiC
Method: single particle / : Sandate CR, Swan JA, Partch CL, Lander GC

EMDB-23061:
Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA complex
Method: single particle / : Chowdhury S, Anzelon TA, MacRae IJ, Lander GC

EMDB-23062:
Cryo-EM structure of EfPiwiA(MID/PIWI domains)-piRNA-long-target complex
Method: single particle / : Chowdhury S, Anzelon TA, MacRae IJ, Lander GC

EMDB-23063:
Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA-target complex
Method: single particle / : Chowdhury S, Anzelon TA, MacRae IJ, Lander GC

EMDB-23013:
Human mitochondrial LONP1 in complex with Bortezomib
Method: single particle / : Shin M, Watson ER, Song AS, Mindrebo JT, Novick SR, Griffin P, Wiseman RL, Lander GC

EMDB-23320:
WalkerB mutant human mitochondrial LONP1 bound to endogenous substrate
Method: single particle / : Shin M, Watson ER, Song AS, Novick SR, Griffin P, Wiseman RL, Lander GC

EMDB-23019:
Substrate-free human mitochondrial LONP1
Method: single particle / : Shin M, Watson ER, Song AS, Mindrebo JT, Novick SR, Griffin P, Wiseman RL, Lander GC

EMDB-23020:
Human mitochondrial LONP1 with endogenous substrate
Method: single particle / : Shin M, Watson ER, Song AS, Mindrebo JT, Novick SR, Griffin P, Wiseman RL, Lander GC

EMDB-22259:
Human 20S proteasome bound to an engineered 11S (PA26) activator
Method: single particle / : de la Pena AH, Opoku-Nsiah KA, Williams SK, Chopra N, Sali A, Gestwicki JE, Lander GC

EMDB-21516:
Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex
Method: single particle / : Hirschi M, Santiago-Frangos A

EMDB-21517:
Cryo-EM structure of anti-CRISPR AcrIF9 and dsDNA, bound to the type I-F crRNA-guided CRISPR surveillance complex
Method: single particle / : Hirschi M, Santiago-Frangos A, Wilkinson R, Golden SM, Wiedenheft B, Lander GC

EMDB-21023:
Single-particle cryo-EM reconstruction of rabbit muscle aldolase using 200 keV
Method: single particle / : Wu M, Lander GC, Herzik MA

EMDB-21024:
Single-particle cryo-EM reconstruction of mouse heavy chain apoferritin at 200 keV
Method: single particle / : Wu M, Lander GC

EMDB-21009:
Lon Protease from Yersinia pestis
Method: single particle / : Shin M, Puchades C

EMDB-20367:
Cryo-EM structure of the zebrafish TRPM2 channel in the apo conformation, processed with C4 symmetry
Method: single particle / : Yin Y, Wu M

EMDB-20368:
Cryo-EM structure of the zebrafish TRPM2 channel in the apo conformation, processed with C2 symmetry (pseudo C4 symmetry)
Method: single particle / : Yin Y, Wu M

EMDB-20369:
Cryo-EM structure of the zebrafish TRPM2 channel in the presence of ADPR and Ca2+
Method: single particle / : Yin Y, Wu M, Hsu AL, Borschel WF, Borgnia MJ, Lander GC, Lee SY

EMDB-20226:
Spastin hexamer in complex with substrate
Method: single particle / : Sandate CR, Szyk A

EMDB-0552:
human m-AAA protease AFG3L2, substrate-bound
Method: single particle / : Lander GC, Puchades C

EMDB-7822:
Cryo-EM structure of the zebrafish TRPM2 channel in the presence of Ca2+
Method: single particle / : Yin Y, Wu M, Borschel WF, Lander GC, Lee SY

EMDB-20133:
Lon Protease from Yersinia pestis with Y2853 substrate
Method: single particle / : Shin M, Asmita A

EMDB-0406:
Single-particle cryo-EM reconstruction of horse liver alcohol dehydrogenase using 200 keV
Method: single particle / : Herzik Jr MA, Wu M, Lander GC

EMDB-0407:
Single-particle cryo-EM reconstruction of human methemoglobin using 200 keV, state 1
Method: single particle / : Herzik Jr MA, Wu M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more