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5X9J
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BU of 5x9j by Molmil
Structure of PrhC from Penicillium brasilianum NBRC 6234
Descriptor: PrhC
Authors:Mori, T, Wang, H, Matsuda, Y, Abe, I.
Deposit date:2017-03-08
Release date:2017-07-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis
Nat. Chem. Biol., 13, 2017
5GK2
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BU of 5gk2 by Molmil
The structure of the H302A mutant of StlD
Descriptor: Ketosynthase StlD
Authors:Mori, T, Dngfeng, Y, Morita, H, Abe, I.
Deposit date:2016-07-03
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
5GK0
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BU of 5gk0 by Molmil
Crystal structure of selnomethionin-labeled ketosynthase StlD
Descriptor: Ketosynthase StlD
Authors:Mori, T, Saito, Y, Morita, H, Abe, I.
Deposit date:2016-07-03
Release date:2017-07-05
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.331 Å)
Cite:Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
5GK1
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BU of 5gk1 by Molmil
Crystal structure of the ketosynthase StlD complexed with substrate
Descriptor: 3-OXO-5-METHYLHEXANOIC ACID, Ketosynthase StlD
Authors:Mori, T, Saito, Y, Morita, H, Abe, I.
Deposit date:2016-07-03
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
5WQF
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BU of 5wqf by Molmil
Structure of fungal meroterpenoid isomerase Trt14
Descriptor: CALCIUM ION, Isomerase trt14, N-PROPANOL
Authors:Mori, T, Iwabuchi, T, Matsuda, Y, Abe, I.
Deposit date:2016-11-26
Release date:2017-07-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis
Nat. Chem. Biol., 13, 2017
5WQH
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BU of 5wqh by Molmil
Structure of fungal meroterpenoid isomerase Trt14 complexed with substrate analog and endo-terretonin D
Descriptor: CALCIUM ION, Isomerase trt14, methyl (2S,4aR,4bS,5S,6aS,10aS,10bS,12aS)-2,4b,7,7,10a,12,12a-heptamethyl-5-oxidanyl-1,4,6,8-tetrakis(oxidanylidene)-4a,5,6a,9,10,10b-hexahydronaphtho[1,2-h]isochromene-2-carboxylate, ...
Authors:Mori, T, Matsuda, Y, Abe, I.
Deposit date:2016-11-26
Release date:2017-07-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis
Nat. Chem. Biol., 13, 2017
5WQG
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BU of 5wqg by Molmil
Structure of fungal meroterpenoid isomerase Trt14 complexed with terretonin D
Descriptor: CALCIUM ION, Isomerase trt14, methyl (2S,4aR,4bS,5S,6aS,10aS,10bS,12aS)-2,4b,7,7,10a,12a-hexamethyl-12-methylidene-5-oxidanyl-1,4,6,8-tetrakis(oxidanylidene) -5,6a,9,10,10b,11-hexahydro-4aH-naphtho[1,2-h]isochromene-2-carboxylate
Authors:Mori, T, Matsuda, Y, Abe, I.
Deposit date:2016-11-26
Release date:2017-07-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis
Nat. Chem. Biol., 13, 2017
5WQI
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BU of 5wqi by Molmil
Structure of fungal meroterpenoid isomerase Trt14 complexed with hydrolyzed product
Descriptor: (1R,2S,4aS,4bS,8aS,10S,10aS)-2-[(2S)-3-methoxy-2-methyl-2-oxidanyl-3-oxidanylidene-propanoyl]-2,3,4b,8,8,10a-hexamethyl-10-oxidanyl-7,9-bis(oxidanylidene)-1,4a,5,6,8a,10-hexahydrophenanthrene-1-carboxylic acid, CALCIUM ION, Isomerase trt14
Authors:Mori, T, Matsuda, Y, Abe, I.
Deposit date:2016-11-27
Release date:2017-07-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis
Nat. Chem. Biol., 13, 2017
8Y9P
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BU of 8y9p by Molmil
Crystal structure of bacterial activating sulfotransferase SgdX2
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, GLYCEROL, SgdX2
Authors:Mori, T, Teramoto, T, Kakuta, Y.
Deposit date:2024-02-07
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of activating sulfotransferase SgdX2 involved in biosynthesis of secondary metabolite sungeidine.
Biochem.Biophys.Res.Commun., 711, 2024
7EXZ
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BU of 7exz by Molmil
DgpB-DgpC complex apo 2.5 angstrom
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
Authors:Mori, T, Senda, M, Senda, T, Abe, I.
Deposit date:2021-05-29
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7EXB
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BU of 7exb by Molmil
DfgA-DfgB complex apo 2.4 angstrom
Descriptor: DfgB, MANGANESE (II) ION, SULFATE ION, ...
Authors:Mori, T, Senda, M, Senda, T, Abe, I.
Deposit date:2021-05-26
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7DRE
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BU of 7dre by Molmil
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
Descriptor: DfgB, Sugar phosphate isomerase/epimerase
Authors:Mori, T, Moriya, T, Adachi, N, Senda, T, Abe, I.
Deposit date:2020-12-28
Release date:2021-12-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7DRD
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BU of 7drd by Molmil
Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
Descriptor: AP_endonuc_2 domain-containing protein, DgpB
Authors:Mori, T, Moriya, T, Adachi, N, Senda, T, Abe, I.
Deposit date:2020-12-28
Release date:2021-12-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
8K3H
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BU of 8k3h by Molmil
Cryo-EM structure of PseP with NAD at 2.86 angstrom resolution
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PseP
Authors:Mori, T, Awakawa, T, Adachi, N, Abe, I.
Deposit date:2023-07-15
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Cryo-EM structure of PseP with NAD at 2.86 angstrom resolution
To Be Published
8K3I
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BU of 8k3i by Molmil
Cryo-EM structure of PseP apo
Descriptor: PseP
Authors:Mori, T, Awakawa, T, Adachi, N, Abe, I.
Deposit date:2023-07-15
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Cryo-EM structure of PseP apo
To Be Published
7BVR
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BU of 7bvr by Molmil
DgpB-DgpC complex apo
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
Authors:Mori, T, He, H, Abe, I.
Deposit date:2020-04-11
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7BVS
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BU of 7bvs by Molmil
DfgA-DfgB complex apo
Descriptor: DfgB, GLYCEROL, MANGANESE (II) ION, ...
Authors:Mori, T, He, H, Abe, I.
Deposit date:2020-04-11
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7YN3
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BU of 7yn3 by Molmil
Crystal structure of CcbD complex with CcbZ carrier protein domain
Descriptor: 1,1'-ethane-1,2-diyldipyrrolidine-2,5-dione, 4'-PHOSPHOPANTETHEINE, CcbD, ...
Authors:Mori, T, Lyu, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of CcbD complex with carrier protein
To Be Published
7YN1
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BU of 7yn1 by Molmil
Crystal structure of selenomethionine labeled CcbD
Descriptor: CcbD
Authors:Mori, T, Kadlcik, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of selenomethionine labeled CcbD
To Be Published
7YN2
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BU of 7yn2 by Molmil
Crystal structure of CcbD with methylthiolincosamide
Descriptor: (2R,3R,4S,5R,6R)-2-[(1R,2R)-1-azanyl-2-oxidanyl-propyl]-6-methylsulfanyl-oxane-3,4,5-triol, CcbD
Authors:Mori, T, Lyu, S, Abe, I.
Deposit date:2022-07-29
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of CcbD with methylthiolincosamide
To Be Published
4YZJ
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BU of 4yzj by Molmil
Crystal structure of selnomethionin-labeled indole prenyltransferase TleC
Descriptor: Tryptophan dimethylallyltransferase
Authors:Mori, T, Matsui, T, Morita, H, Abe, I.
Deposit date:2015-03-25
Release date:2016-03-16
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (2.106 Å)
Cite:Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.
Nat Commun, 7, 2016
4YLA
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BU of 4yla by Molmil
Crystal structure of the indole prenyltransferase MpnD complexed with indolactam V and DMSPP
Descriptor: (2S,5S)-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one, Aromatic prenyltransferase, DIMETHYLALLYL S-THIOLODIPHOSPHATE, ...
Authors:Mori, T, Morita, H, Abe, I.
Deposit date:2015-03-05
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.
Nat Commun, 7, 2016
4YZL
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BU of 4yzl by Molmil
Crystal structure of the indole prenyltransferase TleC complexed with indolactam V and DMSPP
Descriptor: (2S,5S)-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Tryptophan dimethylallyltransferase
Authors:Mori, T, Morita, H, Abe, I.
Deposit date:2015-03-25
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.096 Å)
Cite:Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.
Nat Commun, 7, 2016
3X27
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BU of 3x27 by Molmil
Structure of McbB in complex with tryptophan
Descriptor: Cucumopine synthase, TRYPTOPHAN
Authors:Mori, T, Sahashi, S, Morita, H, Abe, I.
Deposit date:2014-12-10
Release date:2015-10-28
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (2.481 Å)
Cite:Structural Basis for beta-Carboline Alkaloid Production by the Microbial Homodimeric Enzyme McbB
Chem.Biol., 22, 2015
4YL7
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BU of 4yl7 by Molmil
Crystal structure of the indole prenyltransferase MpnD from Marinactinospora thermotolerans
Descriptor: Aromatic prenyltransferase
Authors:Mori, T, Morita, H, Abe, I.
Deposit date:2015-03-05
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.
Nat Commun, 7, 2016

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PDB entries from 2024-09-18

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