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3MFK
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BU of 3mfk by Molmil
Ets1 complex with stromelysin-1 promoter DNA
Descriptor: Protein C-ets-1, stromelysin-1 promoter DNA
Authors:Babayeva, N.D, Mino, K, Tahirov, T.H.
Deposit date:2010-04-02
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Ets1 cooperative binding to palindromic sequences on stromelysin-1 promoter DNA.
Cell Cycle, 9, 2010
1WKV
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BU of 1wkv by Molmil
Crystal structure of O-phosphoserine sulfhydrylase
Descriptor: ACETATE ION, PYRIDOXAL-5'-PHOSPHATE, cysteine synthase
Authors:Oda, Y, Mino, K, Ishikawa, K, Ataka, M.
Deposit date:2004-06-09
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional Structure of a New Enzyme, O-Phosphoserine Sulfhydrylase, involved in l-Cysteine Biosynthesis by a Hyperthermophilic Archaeon, Aeropyrum pernix K1, at 2.0A Resolution
J.Mol.Biol., 351, 2005
7VNX
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BU of 7vnx by Molmil
Crystal structure of TkArkI
Descriptor: GUANOSINE, TkArkI
Authors:Yamashita, S, Minowa, K, Ohira, T, Suzuki, T, Tomita, K.
Deposit date:2021-10-12
Release date:2022-05-04
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
7VTJ
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BU of 7vtj by Molmil
The cross-reaction complex structure with VQIIYK peptide and tau antibody's Fab domain.
Descriptor: Heavy chain of Fab, Light chain of Fab, VQIIYK peptide
Authors:Tsuchida, T, Fukuhara, N, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, Y, Ishida, T, Tomoo, K.
Deposit date:2021-10-29
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The cross-reaction complex structure with VQIIYK peptide and tau antibody's Fab domain.
To Be Published
3WFL
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BU of 3wfl by Molmil
Crtstal structure of glycoside hydrolase family 5 beta-mannanase from Talaromyces trachyspermus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Suzuki, K, Ichinose, H, Kamino, K, Ogasawara, W, Kaneko, S, Fushinobu, S.
Deposit date:2013-07-19
Release date:2014-07-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Purification, cloning, functional expression, structure, and characterization of a thermostable beta-mannanase from Talaromyces trachyspermus and its efficiency in production of mannooligosaccharides from coffee wastes
To be Published
7FGK
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BU of 7fgk by Molmil
The Fab antibody single structure against tau protein.
Descriptor: Fab Heavy Chain, Fab Light Chain, GLYCEROL, ...
Authors:Tsuchida, T, Susa, K, Kibiki, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The free structure of the Fab domain of antibody that recognizes the PHF core region VQIINK in Tau protein.
To Be Published
7FGJ
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BU of 7fgj by Molmil
The cross-reaction complex structure with VQILNK peptide and the tau antibody's Fab domain.
Descriptor: CHLORIDE ION, Fab Heavy Chain, Fab Light Chain, ...
Authors:Tsuchida, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The cross-reaction complex structure with VQILNK peptide and the antibody's Fab domain.
To Be Published
7FGR
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BU of 7fgr by Molmil
The cross-reaction complex structure with VQIFNK peptide and the tau antibody's Fab domain.
Descriptor: AMMONIUM ION, CHLORIDE ION, Fab Heavy Chain, ...
Authors:Tsuchida, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The cross-reaction complex structure with VQIFNK peptide and the tau antibody's Fab domain.
To Be Published
5B3A
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BU of 5b3a by Molmil
Crystal Structure of O-Phoshoserine Sulfhydrylase from Aeropyrum pernix in Complexed with the alpha-Aminoacrylate Intermediate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, Protein CysO
Authors:Nakamura, T, Takeda, E, Kawai, Y, Kataoka, M, Ishikawa, K.
Deposit date:2016-02-12
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Role of F225 in O-phosphoserine sulfhydrylase from Aeropyrum pernix K1
Extremophiles, 20, 2016
5B36
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BU of 5b36 by Molmil
Crystal Structure of the O-Phosphoserine Sulfhydrylase from Aeropyrum pernix Complexed with Cysteine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYSTEINE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nakamura, T, Takeda, E, Kawai, Y, Kataoka, M, Ishikawa, K.
Deposit date:2016-02-10
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Role of F225 in O-phosphoserine sulfhydrylase from Aeropyrum pernix K1
Extremophiles, 20, 2016
3VSA
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BU of 3vsa by Molmil
Crystal Structure of O-phosphoserine sulfhydrylase without acetate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PYRIDOXAL-5'-PHOSPHATE, Protein CysO
Authors:Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K.
Deposit date:2012-04-24
Release date:2012-05-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1
J.Mol.Biol., 422, 2012
3VSD
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BU of 3vsd by Molmil
Crystal Structure of the K127A Mutant of O-Phosphoserine Sulfhydrylase Complexed with External Schiff Base of Pyridoxal 5'-Phosphate with O-Acetyl-L-Serine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, O-ACETYLSERINE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K.
Deposit date:2012-04-24
Release date:2012-05-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1
J.Mol.Biol., 422, 2012
3VSC
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BU of 3vsc by Molmil
Crystal Structure of the K127A Mutant of O-Phosphoserine Sulfhydrylase Complexed with External Schiff Base of Pyridoxal 5'-Phosphate with O-Phospho-L-Serine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHOSERINE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K.
Deposit date:2012-04-24
Release date:2012-05-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1
J.Mol.Biol., 422, 2012
3QHM
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BU of 3qhm by Molmil
Crystal analysis of the complex structure, E342A-cellotetraose, of endocellulase from pyrococcus horikoshii
Descriptor: 458aa long hypothetical endo-1,4-beta-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Kim, H.-W, Ishikawa, K.
Deposit date:2011-01-26
Release date:2012-02-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots
Biochem.J., 437, 2011
3QHN
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BU of 3qhn by Molmil
Crystal analysis of the complex structure, E201A-cellotetraose, of endocellulase from pyrococcus horikoshii
Descriptor: 458aa long hypothetical endo-1,4-beta-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Kim, H.-W, Ishikawa, K.
Deposit date:2011-01-26
Release date:2012-02-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots
Biochem.J., 437, 2011
3QHO
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BU of 3qho by Molmil
Crystal analysis of the complex structure, Y299F-cellotetraose, of endocellulase from pyrococcus horikoshii
Descriptor: 458aa long hypothetical endo-1,4-beta-glucanase, PHOSPHATE ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Kim, H.-W, Ishikawa, K.
Deposit date:2011-01-26
Release date:2012-02-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots
Biochem.J., 437, 2011
4L0Y
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BU of 4l0y by Molmil
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 1)
Descriptor: 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3', 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3', Protein C-ets-1, ...
Authors:Tahirov, T.H.
Deposit date:2013-06-01
Release date:2014-03-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of Ets1 activation by Runx1.
Leukemia, 28, 2014
4L18
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BU of 4l18 by Molmil
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 3)
Descriptor: 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3', 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3', GLYCEROL, ...
Authors:Tahirov, T.H.
Deposit date:2013-06-02
Release date:2014-03-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of Ets1 activation by Runx1.
Leukemia, 28, 2014
4L0Z
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BU of 4l0z by Molmil
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 2)
Descriptor: 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3', 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3', Protein C-ets-1, ...
Authors:Tahirov, T.H.
Deposit date:2013-06-01
Release date:2014-03-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of Ets1 activation by Runx1.
Leukemia, 28, 2014
3RI4
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BU of 3ri4 by Molmil
Ets1 cooperative binding to widely separated sites on promoter DNA
Descriptor: Isoform Ets-1 p27 of Protein C-ets-1, TCR alpha promoter DNA
Authors:Babayeva, N.D, Mino, K, Tahirov, T.H.
Deposit date:2011-04-12
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of ets1 cooperative binding to widely separated sites on promoter DNA.
Plos One, 7, 2012
6F6O
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BU of 6f6o by Molmil
Structure of Adenovirus 3 fiber head V239D mutant
Descriptor: Fiber protein
Authors:Zubieta, C, Fender, P, Stermann, E, Lieber, A.
Deposit date:2017-12-05
Release date:2018-12-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin.
Mol Ther Methods Clin Dev, 2, 2015
7VNW
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BU of 7vnw by Molmil
Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated)
Descriptor: RNA (78-MER)
Authors:Yamashita, S, Ohira, T, Suzuki, T, Tomtia, K.
Deposit date:2021-10-12
Release date:2022-05-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
7VNV
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BU of 7vnv by Molmil
Crystal Structure of tRNAVal from Sulfolobus Tokodaii
Descriptor: RNA (78-MER)
Authors:Yamashita, S, Ohira, T, Suzuki, T, Tomtia, K.
Deposit date:2021-10-12
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
6LRA
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BU of 6lra by Molmil
The complex structure of PHF core domain peptide of tau and antibody's Fab domain.
Descriptor: Fab Heavy Chain, Fab Light Chain, VQIINK
Authors:Tomohiro, T, Kouki, S, Tomohiro, S, Takahiro, T, Katsushiro, M, Yasuko, I, Katsuhiko, M, Taizo, T, Toshimitsu, I, Koji, T.
Deposit date:2020-01-15
Release date:2020-08-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the human tau PHF core domain VQIINK complexed with the Fab domain of monoclonal antibody Tau2r3.
Febs Lett., 2020
4WYJ
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BU of 4wyj by Molmil
Adenovirus 3 head domain mutant V239D
Descriptor: Fiber protein, SULFATE ION
Authors:Lieber, A, Zubieta, C, Fender, P.
Deposit date:2014-11-17
Release date:2015-07-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin.
Mol Ther Methods Clin Dev, 2, 2015

 

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