+Open data
-Basic information
Entry | Database: PDB / ID: 4uid | ||||||
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Title | Crystal structure of the S-layer protein SbsC domains 4 and 5 | ||||||
Components | SURFACE LAYER PROTEIN | ||||||
Keywords | SUGAR BINDING PROTEIN / S-LAYER / SBSC / G. STEAROTHERMOPHILUS | ||||||
Function / homology | Function and homology information | ||||||
Biological species | GEOBACILLUS STEAROTHERMOPHILUS (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å | ||||||
Authors | Pavkov-Keller, T. / Dordic, A. / Egelseer, E.M. / Sleytr, U.B. / Keller, W. | ||||||
Citation | Journal: To be Published Title: Structure of the S-Layer Protein Sbsc Authors: Pavkov-Keller, T. / Dordic, A. / Eder, M. / Davies, K. / Mills, D. / Egelseer, E.M. / Sleytr, U.B. / Kuehlbrandt, W. / Vonck, J. / Keller, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4uid.cif.gz | 76.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4uid.ent.gz | 61.8 KB | Display | PDB format |
PDBx/mmJSON format | 4uid.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ui/4uid ftp://data.pdbj.org/pub/pdb/validation_reports/ui/4uid | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 21642.205 Da / Num. of mol.: 2 / Fragment: DOMAINS 4 AND 5, RESIDUES 443-650 Source method: isolated from a genetically manipulated source Source: (gene. exp.) GEOBACILLUS STEAROTHERMOPHILUS (bacteria) Production host: ESCHERICHIA COLI (E. coli) / References: UniProt: O68840 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.5 Å3/Da / Density % sol: 63 % / Description: NONE |
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Crystal grow | Details: 5.5 MG/ML IN 50MM TRIS/HCL PH 7.2 INDEX CONDITION NO.40 (0.01M CITRIC ACID PH 3.5, 3.0%(W/V) PEG 3350) |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: SLS / Beamline: X06SA / Wavelength: 1 |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: May 29, 2011 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→25 Å / Num. obs: 14641 / % possible obs: 89 % / Observed criterion σ(I): 2.8 / Redundancy: 6.5 % / Rmerge(I) obs: 0.15 / Net I/σ(I): 10.8 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: POLYALA OF RSBSC AA31-844 STRUCTURE Resolution: 2.8→24.93 Å / Cor.coef. Fo:Fc: 0.914 / Cor.coef. Fo:Fc free: 0.875 / SU B: 15.101 / SU ML: 0.298 / Cross valid method: THROUGHOUT / ESU R: 0.782 / ESU R Free: 0.378 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. CHAIN B CONTAINS DISORDERED REGIONS IN DOMAIN 4
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 40.26 Å2
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Refinement step | Cycle: LAST / Resolution: 2.8→24.93 Å
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Refine LS restraints |
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