+Open data
-Basic information
Entry | Database: PDB / ID: 3a7m | ||||||
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Title | Structure of FliT, the flagellar type III chaperone for FliD | ||||||
Components | Flagellar protein fliTFlagellum | ||||||
Keywords | GENE REGULATION / CHAPERONE / Up-down helix bundle / Bacterial flagellum biogenesis / Cytoplasm / Repressor / Transcription / Transcription regulation | ||||||
Function / homology | Function and homology information negative regulation of bacterial-type flagellum assembly / bacterial-type flagellum organization / protein folding / identical protein binding / cytosol Similarity search - Function | ||||||
Biological species | Salmonella typhimurium (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 3.2 Å | ||||||
Authors | Imada, K. / Minamino, T. / Kinoshita, M. / Namba, K. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2010 Title: Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners. Authors: Imada, K. / Minamino, T. / Kinoshita, M. / Furukawa, Y. / Namba, K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 3a7m.cif.gz | 52.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb3a7m.ent.gz | 42.9 KB | Display | PDB format |
PDBx/mmJSON format | 3a7m.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/a7/3a7m ftp://data.pdbj.org/pub/pdb/validation_reports/a7/3a7m | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Details | AUTHOR DEFINED BIOLOGICAL UNIT: UNKNOWN |
-Components
#1: Protein | Mass: 13903.202 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Salmonella typhimurium (bacteria) / Strain: SJW1103 / Gene: fliT, STM1962 / Plasmid: PET3c / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) pLysS / References: UniProt: P0A1N2 |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 4.49 Å3/Da / Density % sol: 72.58 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, sitting drop / pH: 9.5 Details: 1M Potassium sodium tartrate, 0.1M CHES, 0.2M Li2SO4, pH9.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K |
-Data collection
Diffraction | Mean temperature: 35 K / Ambient temp details: He gas cooling cryo system |
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Diffraction source | Source: SYNCHROTRON / Site: SPring-8 / Beamline: BL41XU / Wavelength: 0.97915 Å |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Jan 1, 2008 |
Radiation | Monochromator: Double-crystal monochromator / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97915 Å / Relative weight: 1 |
Reflection | Resolution: 3.2→42.2 Å / Num. all: 8390 / Num. obs: 8390 / % possible obs: 99.3 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 3.9 % / Biso Wilson estimate: 70.1 Å2 / Rsym value: 0.101 / Net I/σ(I): 11.1 |
Reflection shell | Resolution: 3.2→3.37 Å / Redundancy: 4 % / Mean I/σ(I) obs: 2.6 / Num. unique all: 1219 / Rsym value: 0.402 / % possible all: 99.9 |
-Processing
Software |
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Refinement | Method to determine structure: SAD / Resolution: 3.2→42.19 Å / Rfactor Rfree error: 0.01 / Data cutoff high absF: 1423711.61 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 61.7012 Å2 / ksol: 0.403934 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 52.5 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3.2→42.19 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3.2→3.4 Å / Rfactor Rfree error: 0.031 / Total num. of bins used: 6
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Xplor file |
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