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Yorodumi- PDB-2x7p: The Conserved Candida albicans CA3427 Gene Product Defines a New ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2x7p | ||||||
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Title | The Conserved Candida albicans CA3427 Gene Product Defines a New Family of Proteins Exhibiting the Generic Periplasmic Binding Protein Structural Fold | ||||||
Components | POSSIBLE THIAMINE BIOSYNTHESIS ENZYME | ||||||
Keywords | UNKNOWN FUNCTION | ||||||
Function / homology | Function and homology information | ||||||
Biological species | CANDIDA ALBICANS (yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.34 Å | ||||||
Authors | Santini, S. / Monchois, V. / Mouz, N. / Rousselle, T. / Claverie, J.M. / Abergel, C. | ||||||
Citation | Journal: Plos One / Year: 2011 Title: The Conserved Candida Albicans Ca3427 Gene Product Defines a New Family of Proteins Exhibiting the Generic Periplasmic Binding Protein Structural Fold Authors: Santini, S. / Claverie, J.M. / Mouz, N. / Rousselle, T. / Maza, C. / Monchois, V. / Abergel, C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2x7p.cif.gz | 76 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2x7p.ent.gz | 59.7 KB | Display | PDB format |
PDBx/mmJSON format | 2x7p.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/x7/2x7p ftp://data.pdbj.org/pub/pdb/validation_reports/x7/2x7p | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 36371.113 Da / Num. of mol.: 1 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) CANDIDA ALBICANS (yeast) / Strain: NIH3147 / Plasmid: PSF04, PQE80 / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): K-12 / References: UniProt: Q59X88 |
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-Non-polymers , 7 types, 151 molecules
#2: Chemical | ChemComp-CA / | ||||||||
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#3: Chemical | ChemComp-CL / | ||||||||
#4: Chemical | #5: Chemical | ChemComp-AE3 / | #6: Chemical | ChemComp-ACY / #7: Chemical | ChemComp-CO2 / | #8: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.44 Å3/Da / Density % sol: 49.52 % / Description: NONE |
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Crystal grow | Details: 21 % PEG8000, CALCIUM ACETATE 0.2 M, TRIS 0.1 M, 30 % GLYCEROL PH 7.0 |
-Data collection
Diffraction | Mean temperature: 100 K | |||||||||
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM30A / Wavelength: 0.979774, 0.979958 | |||||||||
Detector | Type: MARRESEARCH / Date: Jul 3, 2004 | |||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||
Radiation wavelength |
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Reflection | Resolution: 2.34→23.88 Å / Num. obs: 13442 / % possible obs: 99.1 % / Observed criterion σ(I): 10 / Redundancy: 5.5 % / Biso Wilson estimate: 24.14 Å2 / Rmerge(I) obs: 0.08 / Net I/σ(I): 4.1 | |||||||||
Reflection shell | Resolution: 2.34→2.47 Å / Redundancy: 3 % / Rmerge(I) obs: 0.31 / Mean I/σ(I) obs: 3 / % possible all: 99.1 |
-Processing
Software |
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Refinement | Method to determine structure: MAD Starting model: NONE Resolution: 2.34→23.88 Å / SU ML: 0.28 / σ(F): 2.46 / Phase error: 21.89 / Stereochemistry target values: ML Details: DISORDERED SIDE CHAIN ARE MODELED WITH A OCCUPANCY LESS THAN 1 WITHOUT ALTERNATE CONFORMATION.
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 40.03 Å2 / ksol: 0.4 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 22.75 Å2
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Refinement step | Cycle: LAST / Resolution: 2.34→23.88 Å
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Refine LS restraints |
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LS refinement shell |
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