- PDB-2jm1: Structures and chemical shift assignments for the ADD domain of t... -
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Basic information
Entry
Database: PDB / ID: 2jm1
Title
Structures and chemical shift assignments for the ADD domain of the ATRX protein
Components
Transcriptional regulator ATRX
Keywords
METAL BINDING PROTEIN / ADD domain
Function / homology
Function and homology information
post-embryonic forelimb morphogenesis / Defective Inhibition of DNA Recombination at Telomere Due to DAXX Mutations / Defective Inhibition of DNA Recombination at Telomere Due to ATRX Mutations / positive regulation of nuclear cell cycle DNA replication / negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric / chromosome organization involved in meiotic cell cycle / chromosome, subtelomeric region / Sertoli cell development / meiotic spindle organization / cellular response to hydroxyurea ...post-embryonic forelimb morphogenesis / Defective Inhibition of DNA Recombination at Telomere Due to DAXX Mutations / Defective Inhibition of DNA Recombination at Telomere Due to ATRX Mutations / positive regulation of nuclear cell cycle DNA replication / negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric / chromosome organization involved in meiotic cell cycle / chromosome, subtelomeric region / Sertoli cell development / meiotic spindle organization / cellular response to hydroxyurea / DNA translocase activity / chromo shadow domain binding / positive regulation of telomere maintenance / condensed chromosome, centromeric region / ATP-dependent chromatin remodeler activity / protein localization to chromosome, telomeric region / nuclear chromosome / seminiferous tubule development / replication fork processing / DNA damage response, signal transduction by p53 class mediator / subtelomeric heterochromatin formation / heterochromatin / pericentric heterochromatin / Inhibition of DNA recombination at telomere / forebrain development / methylated histone binding / helicase activity / multicellular organism growth / PML body / chromatin DNA binding / nucleosome assembly / chromatin organization / histone binding / chromosome, telomeric region / spermatogenesis / DNA helicase / transcription by RNA polymerase II / chromatin remodeling / nuclear body / DNA repair / chromatin binding / regulation of DNA-templated transcription / positive regulation of transcription by RNA polymerase II / ATP hydrolysis activity / nucleoplasm / ATP binding / nucleus / metal ion binding Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M
Radiation wavelength
Relative weight: 1
NMR spectrometer
Type
Manufacturer
Model
Field strength (MHz)
Spectrometer-ID
Bruker Avance
Bruker
AVANCE
800
1
Bruker DRX
Bruker
DRX
500
2
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Processing
NMR software
Name
Version
Developer
Classification
XwinNMR
3.5
BrukerBiospin
collection
XwinNMR
3.5
BrukerBiospin
processing
Sparky
TGoddard
dataanalysis
Sparky
TGoddard
peakpicking
X-PLOR
3.8
ATBrunger
structuresolution
X-PLOR
3.8
ATBrunger
refinement
Refinement
Method: simulated annealing / Software ordinal: 1
NMR representative
Selection criteria: lowest energy
NMR ensemble
Conformer selection criteria: lowest energy / Conformers calculated total number: 100 / Conformers submitted total number: 32 / Maximum upper distance constraint violation: 0.27 Å
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