+Open data
-Basic information
Entry | Database: PDB / ID: 2ae1 | ||||||
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Title | TROPINONE REDUCTASE-II | ||||||
Components | TROPINONE REDUCTASE-II | ||||||
Keywords | OXIDOREDUCTASE / TROPANE ALKALOID BIOSYNTHESIS / REDUCTION OF TROPINONE TO PSEUDOTROPINE / SHORT-CHAIN DEHYDROGENASE | ||||||
Function / homology | Function and homology information tropinone reductase II / tropinone reductase activity / tropane alkaloid biosynthetic process Similarity search - Function | ||||||
Biological species | Datura stramonium (jimsonweed) | ||||||
Method | X-RAY DIFFRACTION / MIRAS / Resolution: 2.3 Å | ||||||
Authors | Nakajima, K. / Yamashita, A. / Akama, H. / Nakatsu, T. / Kato, H. / Hashimoto, T. / Oda, J. / Yamada, Y. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 1998 Title: Crystal structures of two tropinone reductases: different reaction stereospecificities in the same protein fold. Authors: Nakajima, K. / Yamashita, A. / Akama, H. / Nakatsu, T. / Kato, H. / Hashimoto, T. / Oda, J. / Yamada, Y. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1993 Title: Two Tropinone Reductases with Different Stereospecificities are Short-Chain Dehydrogenases Evolved from a Common Ancestor Authors: Nakajima, K. / Hashimoto, T. / Yamada, Y. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2ae1.cif.gz | 57.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2ae1.ent.gz | 46 KB | Display | PDB format |
PDBx/mmJSON format | 2ae1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2ae1_validation.pdf.gz | 416 KB | Display | wwPDB validaton report |
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Full document | 2ae1_full_validation.pdf.gz | 419.3 KB | Display | |
Data in XML | 2ae1_validation.xml.gz | 12.3 KB | Display | |
Data in CIF | 2ae1_validation.cif.gz | 16.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ae/2ae1 ftp://data.pdbj.org/pub/pdb/validation_reports/ae/2ae1 | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 28339.445 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Datura stramonium (jimsonweed) / Cell line: BL21 / Organ: CULTURED ROOT / Plasmid: PETTR2 / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: P50163, tropinone reductase II |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45 % | ||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 6 / Details: pH 6.0 | ||||||||||||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 20 ℃ / pH: 7.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 113 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RUH3R / Wavelength: 1.5418 |
Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: Sep 7, 1996 / Details: COLLIMATOR |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.03→64.2 Å / Num. obs: 14339 / % possible obs: 81.8 % / Observed criterion σ(I): 1 / Redundancy: 7.2 % / Rmerge(I) obs: 0.087 / Net I/σ(I): 11.65 |
Reflection shell | Resolution: 2.02→2.25 Å / Rmerge(I) obs: 0.216 / Mean I/σ(I) obs: 2.81 / % possible all: 55 |
Reflection | *PLUS Num. measured all: 103356 |
-Processing
Software |
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Refinement | Method to determine structure: MIRAS / Resolution: 2.3→10 Å / Cross valid method: THROUGHOUT / σ(F): 2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.3→10 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.3→2.4 Å / Total num. of bins used: 8
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Xplor file |
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Software | *PLUS Name: X-PLOR / Version: 3.851 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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