+Open data
-Basic information
Entry | Database: PDB / ID: 1zfd | ||||||
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Title | SWI5 ZINC FINGER DOMAIN 2, NMR, 45 STRUCTURES | ||||||
Components | SWI5SWI/SNF | ||||||
Keywords | ZINC FINGER DNA BINDING DOMAIN / DNA BINDING MOTIF | ||||||
Function / homology | Function and homology information positive regulation of mating type switching / mediator complex binding / RNA polymerase II transcription regulatory region sequence-specific DNA binding / sequence-specific DNA binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / metal ion binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Neuhaus, D. / Nakaseko, Y. / Schwabe, J.W.R. / Rhodes, D. / Klug, A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1992 Title: Solution structures of two zinc-finger domains from SWI5 obtained using two-dimensional 1H nuclear magnetic resonance spectroscopy. A zinc-finger structure with a third strand of beta-sheet. Authors: Neuhaus, D. / Nakaseko, Y. / Schwabe, J.W. / Klug, A. #1: Journal: J.Mol.Biol. / Year: 1992 Title: Adjacent Zinc-Finger Motifs in Multiple Zinc-Finger Peptides from Swi5 Form Structurally Independent, Flexibly Linked Domains Authors: Nakaseko, Y. / Neuhaus, D. / Klug, A. / Rhodes, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1zfd.cif.gz | 456.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1zfd.ent.gz | 392.1 KB | Display | PDB format |
PDBx/mmJSON format | 1zfd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zf/1zfd ftp://data.pdbj.org/pub/pdb/validation_reports/zf/1zfd | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3800.272 Da / Num. of mol.: 1 / Fragment: ZINC FINGER DOMAIN 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Description: T7 PROMOTER / Plasmid: PRK172 / Production host: Escherichia coli (E. coli) / References: UniProt: P08153 |
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#2: Chemical | ChemComp-ZN / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
Software |
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NMR software | Name: X-PLOR / Version: 2.1 / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformers submitted total number: 45 |