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Yorodumi- PDB-1ard: STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATION... -
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-Basic information
Entry | Database: PDB / ID: 1ard | ||||||
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Title | STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING | ||||||
Components | YEAST TRANSCRIPTION FACTOR ADR1 | ||||||
Keywords | TRANSCRIPTION REGULATION | ||||||
Function / homology | Function and homology information positive regulation of transcription from RNA polymerase II promoter by oleic acid / positive regulation of peroxisome organization / positive regulation of ethanol catabolic process / peroxisome organization / positive regulation of fatty acid beta-oxidation / cellular response to ethanol / TFIID-class transcription factor complex binding / TFIIB-class transcription factor binding / chromatin organization / sequence-specific DNA binding ...positive regulation of transcription from RNA polymerase II promoter by oleic acid / positive regulation of peroxisome organization / positive regulation of ethanol catabolic process / peroxisome organization / positive regulation of fatty acid beta-oxidation / cellular response to ethanol / TFIID-class transcription factor complex binding / TFIIB-class transcription factor binding / chromatin organization / sequence-specific DNA binding / transcription coactivator activity / nucleic acid binding / RNA polymerase II-specific DNA-binding transcription factor binding / molecular adaptor activity / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / regulation of transcription by RNA polymerase II / chromatin / positive regulation of transcription by RNA polymerase II / nucleus / metal ion binding / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Hoffman, R.C. / Xu, R.X. / Horvath, S.J. / Herriott, J.R. / Klevit, R.E. | ||||||
Citation | Journal: Protein Sci. / Year: 1993 Title: Structures of DNA-binding mutant zinc finger domains: implications for DNA binding. Authors: Hoffman, R.C. / Horvath, S.J. / Klevit, R.E. #1: Journal: J.Magn.Reson. / Year: 1993 Title: A Simple Method for the Refinement of Models Derived from NMR Data Demonstrated on a Zinc Finger Domain from Yeast Adr1 Authors: Hoffman, R.C. / Xu, R.X. / Klevit, R.E. / Herriott, J.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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PDBx/mmCIF format | 1ard.cif.gz | 106.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ard.ent.gz | 85.1 KB | Display | PDB format |
PDBx/mmJSON format | 1ard.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ard_validation.pdf.gz | 341 KB | Display | wwPDB validaton report |
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Full document | 1ard_full_validation.pdf.gz | 404 KB | Display | |
Data in XML | 1ard_validation.xml.gz | 10.6 KB | Display | |
Data in CIF | 1ard_validation.cif.gz | 14.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ar/1ard ftp://data.pdbj.org/pub/pdb/validation_reports/ar/1ard | HTTPS FTP |
-Related structure data
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-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3600.103 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) References: UniProt: P07248 |
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#2: Chemical | ChemComp-ZN / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR ensemble | Conformers submitted total number: 10 |
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