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Yorodumi- PDB-1slo: FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1slo | ||||||||||||||||||||
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Title | FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / SPLICE DONOR SITE / STEM-LOOP / RIBONUCLEIC ACID | Function / homology | RNA / RNA (> 10) | Function and homology information Biological species | Caenorhabditis elegans (invertebrata) | Method | SOLUTION NMR | Authors | Greenbaum, N.L. / Radhakrishnan, I. / Patel, D.J. / Hirsh, D. | Citation | Journal: Structure / Year: 1996 Title: Solution structure of the donor site of a trans-splicing RNA. Authors: Greenbaum, N.L. / Radhakrishnan, I. / Patel, D.J. / Hirsh, D. #1: Journal: J.Mol.Biol. / Year: 1995 Title: Determination of the Folding Topology of the Sl1 RNA from Caenorhabditis Elegans by Multidimensional Heteronuclear NMR Authors: Greenbaum, N.L. / Radhakrishnan, I. / Hirsh, D. / Patel, D.J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1slo.cif.gz | 18.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1slo.ent.gz | 13.1 KB | Display | PDB format |
PDBx/mmJSON format | 1slo.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sl/1slo ftp://data.pdbj.org/pub/pdb/validation_reports/sl/1slo | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 6063.642 Da / Num. of mol.: 1 Fragment: 19 RESIDUE MODIFIED FRAGMENT FROM THE FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS Source method: isolated from a genetically manipulated source Source: (gene. exp.) Caenorhabditis elegans (invertebrata) / Production host: IN VITRO T7 POLYMERASE TRANSCRIPTION |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
Software |
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NMR software | Name: X-PLOR 3.1F / Version: 3.1F / Developer: BRUNGER / Classification: refinement | ||||||||||||
Refinement | Software ordinal: 1 / Details: CHARMM | ||||||||||||
NMR ensemble | Conformer selection criteria: MINIMIZED AVERAGE / Conformers calculated total number: 16 / Conformers submitted total number: 1 |