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Yorodumi- PDB-2krw: Solution structure of the E coli tRNA-Arg1 (ACG) containing the 2... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2krw | ||||||||||||||||||
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Title | Solution structure of the E coli tRNA-Arg1 (ACG) containing the 2-thiocytidine modification in position 32 | ||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / tRNA / 2-thiocytidine / ASL / modification | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / simulated annealing | Authors | Bilbille, Y. / Agris, P.F. | Citation | Journal: To be Published | Title: Solution structure of the tRNA-Arg1 (ACG) containing the 2-thiocytidine modification in position 32 Authors: Bilbille, Y. / Cantara, W.A. / Kim, J. / Agris, P.F. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2krw.cif.gz | 119.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2krw.ent.gz | 103.2 KB | Display | PDB format |
PDBx/mmJSON format | 2krw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kr/2krw ftp://data.pdbj.org/pub/pdb/validation_reports/kr/2krw | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 5457.382 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 20 / pH: 6.8 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 11 |