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Yorodumi- PDB-2kry: Solution structure of the human mitochondrial tRNAMet ASL contain... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2kry | ||||||||||||||||||
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Title | Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34 | ||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / tRNA / 5-formylcytidine / ASL / modification | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / simulated annealing | Authors | Bilbille, Y. / Agris, P.F. | Citation | Journal: To be Published | Title: The Human Mitochondrial tRNAMet ASL structure solved by Nuclear Magnetic Resonance Authors: Bilbille, Y. / Harris, K. / Agris, P.F. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2kry.cif.gz | 107.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2kry.ent.gz | 93.5 KB | Display | PDB format |
PDBx/mmJSON format | 2kry.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kr/2kry ftp://data.pdbj.org/pub/pdb/validation_reports/kr/2kry | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 5405.279 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 20 / pH: 6.8 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |