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- PDB-1slo: FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, ... -

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Basic information

Entry
Database: PDB / ID: 1slo
TitleFIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, MINIMIZED AVERAGE STRUCTURE
ComponentsRNA (5'-R(*UP*UP*AP*CP*CP*CP*AP*AP*GP*UP*UP*UP*GP*AP*GP*GP*UP*AP*A)-3')
KeywordsRNA / SPLICE DONOR SITE / STEM-LOOP / RIBONUCLEIC ACID
Function / homologyRNA / RNA (> 10)
Function and homology information
Biological speciesCaenorhabditis elegans (invertebrata)
MethodSOLUTION NMR
AuthorsGreenbaum, N.L. / Radhakrishnan, I. / Patel, D.J. / Hirsh, D.
Citation
Journal: Structure / Year: 1996
Title: Solution structure of the donor site of a trans-splicing RNA.
Authors: Greenbaum, N.L. / Radhakrishnan, I. / Patel, D.J. / Hirsh, D.
#1: Journal: J.Mol.Biol. / Year: 1995
Title: Determination of the Folding Topology of the Sl1 RNA from Caenorhabditis Elegans by Multidimensional Heteronuclear NMR
Authors: Greenbaum, N.L. / Radhakrishnan, I. / Hirsh, D. / Patel, D.J.
History
DepositionMay 24, 1996Processing site: BNL
Revision 1.0Dec 7, 1996Provider: repository / Type: Initial release
Revision 1.1Mar 5, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RNA (5'-R(*UP*UP*AP*CP*CP*CP*AP*AP*GP*UP*UP*UP*GP*AP*GP*GP*UP*AP*A)-3')


Theoretical massNumber of molelcules
Total (without water)6,0641
Polymers6,0641
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / 16MINIMIZED AVERAGE
Representative

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Components

#1: RNA chain RNA (5'-R(*UP*UP*AP*CP*CP*CP*AP*AP*GP*UP*UP*UP*GP*AP*GP*GP*UP*AP*A)-3') / SL1 RNA


Mass: 6063.642 Da / Num. of mol.: 1
Fragment: 19 RESIDUE MODIFIED FRAGMENT FROM THE FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Caenorhabditis elegans (invertebrata) / Production host: IN VITRO T7 POLYMERASE TRANSCRIPTION

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameVersionClassification
X-PLOR3.1model building
X-PLOR3.1refinement
X-PLOR3.1phasing
NMR softwareName: X-PLOR 3.1F / Version: 3.1F / Developer: BRUNGER / Classification: refinement
RefinementSoftware ordinal: 1 / Details: CHARMM
NMR ensembleConformer selection criteria: MINIMIZED AVERAGE / Conformers calculated total number: 16 / Conformers submitted total number: 1

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