+Open data
-Basic information
Entry | Database: PDB / ID: 1mbj | ||||||
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Title | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 | ||||||
Components | MYB PROTO-ONCOGENE PROTEIN | ||||||
Keywords | DNA BINDING PROTEIN / PROTOONCOGENE PRODUCT | ||||||
Function / homology | Function and homology information positive regulation of testosterone secretion / myeloid cell development / positive regulation of hepatic stellate cell proliferation / positive regulation of hepatic stellate cell activation / positive regulation of transforming growth factor beta production / embryonic digestive tract development / stem cell division / myeloid cell differentiation / cellular response to interleukin-6 / WD40-repeat domain binding ...positive regulation of testosterone secretion / myeloid cell development / positive regulation of hepatic stellate cell proliferation / positive regulation of hepatic stellate cell activation / positive regulation of transforming growth factor beta production / embryonic digestive tract development / stem cell division / myeloid cell differentiation / cellular response to interleukin-6 / WD40-repeat domain binding / positive regulation of glial cell proliferation / homeostasis of number of cells / positive regulation of collagen biosynthetic process / spleen development / B cell differentiation / positive regulation of smooth muscle cell proliferation / thymus development / cellular response to leukemia inhibitory factor / G1/S transition of mitotic cell cycle / RNA polymerase II transcription regulator complex / calcium ion transport / positive regulation of neuron apoptotic process / regulation of gene expression / mitotic cell cycle / DNA-binding transcription activator activity, RNA polymerase II-specific / in utero embryonic development / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / regulation of DNA-templated transcription / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / nucleus / cytosol Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Ogata, K. / Morikawa, S. / Nakamura, H. / Hojo, H. / Yoshimura, S. / Zhang, R. / Aimoto, S. / Ametani, Y. / Hirata, Z. / Sarai, A. ...Ogata, K. / Morikawa, S. / Nakamura, H. / Hojo, H. / Yoshimura, S. / Zhang, R. / Aimoto, S. / Ametani, Y. / Hirata, Z. / Sarai, A. / Ishii, S. / Nishimura, Y. | ||||||
Citation | Journal: Nat.Struct.Biol. / Year: 1995 Title: Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb. Authors: Ogata, K. / Morikawa, S. / Nakamura, H. / Hojo, H. / Yoshimura, S. / Zhang, R. / Aimoto, S. / Ametani, Y. / Hirata, Z. / Sarai, A. / Ishii, S. / Nishimura, Y. #1: Journal: Cell(Cambridge,Mass.) / Year: 1994 Title: Solution Structure of a Specific DNA Complex of the Myb DNA-Binding Domain with Cooperative Recognition Helices Authors: Ogata, K. / Morikawa, S. / Nakamura, H. / Sekikawa, A. / Inoue, T. / Kanai, H. / Sarai, A. / Ishii, S. / Nishimura, Y. #2: Journal: Proc.Natl.Acad.Sci.USA / Year: 1992 Title: Solution Structure of a DNA-Binding Unit of Myb: A Helix-Turn-Helix-Related Motif with Conserved Tryptophans Forming a Hydrophobic Core Authors: Ogata, K. / Hojo, H. / Aimoto, S. / Nakai, T. / Nakamura, H. / Sarai, A. / Ishii, S. / Nishimura, Y. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mbj.cif.gz | 28.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mbj.ent.gz | 17.7 KB | Display | PDB format |
PDBx/mmJSON format | 1mbj.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1mbj_validation.pdf.gz | 326.4 KB | Display | wwPDB validaton report |
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Full document | 1mbj_full_validation.pdf.gz | 326.1 KB | Display | |
Data in XML | 1mbj_validation.xml.gz | 2.4 KB | Display | |
Data in CIF | 1mbj_validation.cif.gz | 2.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mb/1mbj ftp://data.pdbj.org/pub/pdb/validation_reports/mb/1mbj | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6259.194 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: GENE C-MYB, NMR, MINIMIZED AVERAGE STRUCTURE; ENGINEERED Source: (natural) Mus musculus (house mouse) / References: UniProt: P06876 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-Processing
Software | Name: AMBER / Classification: refinement | |||||||||
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NMR software |
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Refinement | Software ordinal: 1 Details: A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL STRUCTURES, AND THEN BY ...Details: A TOTAL OF 50 STRUCTURES WERE CALCULATED. THE COORDINATES OF THE RESTRAINED MINIMIZED AVERAGED STRUCTURE WERE OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL STRUCTURES, AND THEN BY SUBJECTING THE RESULTING COORDINATES TO THE RESTRAINED ENERGY MINIMIZATION BY PRESTO. | |||||||||
NMR ensemble | Conformers submitted total number: 1 |