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Yorodumi- PDB-1dhm: DNA-BINDING DOMAIN OF E2 FROM HUMAN PAPILLOMAVIRUS-31, NMR, MINIM... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1dhm | ||||||
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Title | DNA-BINDING DOMAIN OF E2 FROM HUMAN PAPILLOMAVIRUS-31, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||
Components | E2 PROTEIN | ||||||
Keywords | DNA BINDING PROTEIN / DNA-BINDING PROTEIN / TRANSCRIPTIONAL ACTIVATOR / EARLY PROTEIN / TRANS-ACTING FACTOR | ||||||
Function / homology | Function and homology information viral DNA genome replication / regulation of DNA replication / DNA replication / DNA-binding transcription factor activity / DNA-templated transcription / nucleotide binding / host cell nucleus / DNA binding Similarity search - Function | ||||||
Biological species | Human papillomavirus type | ||||||
Method | SOLUTION NMR | ||||||
Authors | Liang, H. / Petros, A.P. / Meadows, R.P. / Yoon, H.S. / Egan, D.A. / Walter, K. / Holzman, T.F. / Robins, T. / Fesik, S.W. | ||||||
Citation | Journal: Biochemistry / Year: 1996 Title: Solution structure of the DNA-binding domain of a human papillomavirus E2 protein: evidence for flexible DNA-binding regions. Authors: Liang, H. / Petros, A.M. / Meadows, R.P. / Yoon, H.S. / Egan, D.A. / Walter, K. / Holzman, T.F. / Robins, T. / Fesik, S.W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1dhm.cif.gz | 62.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1dhm.ent.gz | 47.9 KB | Display | PDB format |
PDBx/mmJSON format | 1dhm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1dhm_validation.pdf.gz | 342.1 KB | Display | wwPDB validaton report |
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Full document | 1dhm_full_validation.pdf.gz | 350 KB | Display | |
Data in XML | 1dhm_validation.xml.gz | 5.4 KB | Display | |
Data in CIF | 1dhm_validation.cif.gz | 7.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dh/1dhm ftp://data.pdbj.org/pub/pdb/validation_reports/dh/1dhm | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 9523.972 Da / Num. of mol.: 2 / Fragment: DNA-BINDING DOMAIN Source method: isolated from a genetically manipulated source Details: FROM HUMAN PAPILLOMAVIRUS-31 / Source: (gene. exp.) Human papillomavirus type / Genus: Alphapapillomavirus / Species: Human papillomavirus - 16 / Strain: 31 / Description: T7 RNA POLYMERASE DRIVEN / Gene: E2 / Plasmid: PET3B / Production host: Escherichia coli (E. coli) / References: UniProt: P17383 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
Software |
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NMR software | Name: X-PLOR / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformer selection criteria: MINIMIZED AVERAGE / Conformers submitted total number: 1 |