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Yorodumi- PDB-1d9j: SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE -
+Open data
-Basic information
Entry | Database: PDB / ID: 1d9j | ||||||
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Title | SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE | ||||||
Components | CECROPIN A-MAGAININ 2 HYBRID PEPTIDE | ||||||
Keywords | ANTIMICROBIAL PROTEIN / HELIX-HINGE-HELIX | ||||||
Function / homology | Function and homology information regulation of defense response to virus / defense response to fungus / antibacterial humoral response / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / innate immune response / extracellular space / extracellular region Similarity search - Function | ||||||
Method | SOLUTION NMR / HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING | ||||||
Authors | Oh, D. / Kim, Y. | ||||||
Citation | Journal: J.Pept.Res. / Year: 1999 Title: NMR structural characterization of cecropin A(1-8) - magainin 2(1-12) and cecropin A (1-8) - melittin (1-12) hybrid peptides. Authors: Oh, D. / Shin, S.Y. / Kang, J.H. / Hahm, K.S. / Kim, K.L. / Kim, Y. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1d9j.cif.gz | 142.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1d9j.ent.gz | 105.6 KB | Display | PDB format |
PDBx/mmJSON format | 1d9j.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1d9j_validation.pdf.gz | 338 KB | Display | wwPDB validaton report |
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Full document | 1d9j_full_validation.pdf.gz | 440.1 KB | Display | |
Data in XML | 1d9j_validation.xml.gz | 10.5 KB | Display | |
Data in CIF | 1d9j_validation.cif.gz | 15.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/d9/1d9j ftp://data.pdbj.org/pub/pdb/validation_reports/d9/1d9j | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2411.050 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE FOR THIS PEPTIDE IS A HYBRID OF SEQUENCES WHICH OCCUR NATURALLY IN HYALOPHORA CECROPIA (CECROPIA MOTH) AND XENOPUS LAEVIS (AFRICAN CLAWED FROG) References: UniProt: P01507, UniProt: P11006 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES. |
-Sample preparation
Details |
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Sample conditions | pH: 4.06 / Pressure: 1 atm / Temperature: 298 K | ||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING Software ordinal: 1 | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 20 |