[English] 日本語
Yorodumi- PDB-1akp: SEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATI... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1akp | ||||||
---|---|---|---|---|---|---|---|
Title | SEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATION OF APOKEDARCIDIN | ||||||
Components | APOKEDARCIDIN | ||||||
Keywords | ANTIBIOTIC CHROMOPROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | actinomycete ATCC 53650 (bacteria) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. ...Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. / Farmer II, B.T. / Metzler, W.J. / Bruccoleri, R.E. / Mueller, L. | ||||||
Citation | Journal: Biochemistry / Year: 1994 Title: Sequential 1H, 13C, and 15N NMR assignments and solution conformation of apokedarcidin. Authors: Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. / Farmer III, B.T. / Metzler, W.J. / ...Authors: Constantine, K.L. / Colson, K.L. / Wittekind, M. / Friedrichs, M.S. / Zein, N. / Tuttle, J. / Langley, D.R. / Leet, J.E. / Schroeder, D.R. / Lam, K.S. / Farmer III, B.T. / Metzler, W.J. / Bruccoleri, R.E. / Mueller, L. #1: Journal: J.Am.Chem.Soc. / Year: 1993 Title: Chemistry and Structure Elucidation of the Kedarcidin Chromophore Authors: Leet, J.E. / Schroeder, D.R. / Langley, D.R. / Colson, K.L. / Huang, S. / Klohr, S.E. / Lee, M.S. / Golik, J. / Hofstead, S.J. / Doyle, T.W. / Matson, J.A. #2: Journal: Proc.Natl.Acad.Sci.USA / Year: 1993 Title: Kedarcidin Chromophore: An Enediyne that Cleaves DNA in a Sequence-Specific Manner Authors: Zein, N. / Colson, K.L. / Leet, J.E. / Schroeder, D.R. / Solomon, W. / Doyle, T.W. / Casazza, A.M. #3: Journal: Proc.Natl.Acad.Sci.USA / Year: 1993 Title: Selective Proteolytic Activity of the Antitumor Agent Kedarcidin Authors: Zein, N. / Casazza, A.M. / Doyle, T.W. / Leet, J.E. / Scheoeder, D.R. / Solomon, W. / Nadler, S.G. #4: Journal: J.Antibiot. / Year: 1992 Title: Kedarcidin, a New Chromoprotein Antitumor Antibiotic. II. Isolation, Purification and Physico-Chemical Properties Authors: Hofstead, S.J. / Matson, J.A. / Malacko, A.R. / Marquart, H. #5: Journal: J.Antibiot. / Year: 1991 Title: Kedarcidin, a New Chromoprotein Antitumor Antibiotic I. Taxonomy of Producing Organism, Fermentation and Biological Activity Authors: Lam, K.S. / Hesler, G.A. / Gustavson, D.R. / Crosswell, A.R. / Veitch, J.M. / Forenza, S. / Tomita, K. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1akp.cif.gz | 434.5 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1akp.ent.gz | 376.4 KB | Display | PDB format |
PDBx/mmJSON format | 1akp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1akp_validation.pdf.gz | 346.2 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 1akp_full_validation.pdf.gz | 426.4 KB | Display | |
Data in XML | 1akp_validation.xml.gz | 22.8 KB | Display | |
Data in CIF | 1akp_validation.cif.gz | 43.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ak/1akp ftp://data.pdbj.org/pub/pdb/validation_reports/ak/1akp | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
Atom site foot note | 1: CIS PROLINE - PRO 9 / 2: CIS PROLINE - PRO 81 | |||||||||
NMR ensembles |
|
-Components
#1: Protein | Mass: 10972.936 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) actinomycete ATCC 53650 (bacteria) / Strain: L585-6 / ATCC 53650 / References: UniProt: P41249 |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|
-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
---|
-Processing
Software |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
NMR software | Name: X-PLOR / Developer: BRUNGER / Classification: refinement | ||||||||
NMR ensemble | Conformers submitted total number: 15 |