[日本語] English
- PDB-4csf: Structural insights into Toscana virus RNA encapsidation -

+
データを開く


IDまたはキーワード:

読み込み中...

-
基本情報

登録情報
データベース: PDB / ID: 4csf
タイトルStructural insights into Toscana virus RNA encapsidation
要素
  • (NUCLEOPROTEIN核タンパク質) x 3
  • RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
キーワードVIRAL PROTEIN/RNA (ウイルス性) / VIRAL PROTEIN-RNA COMPLEX (ウイルス性) / VIRAL PROTEIN (ウイルスタンパク質) / NUCLEOCAPSID (カプシド) / NUCLEOPROTEIN (核タンパク質) / HEXAMERIC (オリゴマー) / INFECTIOUS (感染)
機能・相同性
機能・相同性情報


helical viral capsid / host cell endoplasmic reticulum-Golgi intermediate compartment / host cell Golgi apparatus / viral nucleocapsid / ribonucleoprotein complex / host cell nucleus / RNA binding
類似検索 - 分子機能
Nucleocapsid, Phlebovirus/Tenuivirus / Nucleocapsid, Phlebovirus / Tenuivirus/Phlebovirus nucleocapsid protein
類似検索 - ドメイン・相同性
リボ核酸 / 核タンパク質
類似検索 - 構成要素
生物種TOSCANA VIRUS (ウイルス)
SYNTHETIC CONSTRUCT (人工物)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.598 Å
データ登録者Olal, D. / Daumke, O.
引用ジャーナル: Nucleic Acids Res. / : 2014
タイトル: Structural Insights Into RNA Encapsidation and Helical Assembly of the Toscana Virus Nucleoprotein.
著者: Olal, D. / Dick, A. / Woods, V.L. / Liu, T. / Li, S. / Devignot, S. / Weber, F. / Saphire, E.O. / Daumke, O.
履歴
登録2014年3月7日登録サイト: PDBE / 処理サイト: PDBE
改定 1.02014年4月9日Provider: repository / タイプ: Initial release
改定 1.12014年6月4日Group: Database references
改定 1.22019年10月16日Group: Data collection / Experimental preparation / Other
カテゴリ: exptl_crystal_grow / pdbx_database_status / reflns_shell
Item: _exptl_crystal_grow.method / _pdbx_database_status.status_code_sf / _reflns_shell.Rmerge_I_obs
改定 1.32024年5月8日Group: Data collection / Database references / カテゴリ: chem_comp_atom / chem_comp_bond / database_2
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

-
構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

-
集合体

登録構造単位
A: NUCLEOPROTEIN
B: NUCLEOPROTEIN
C: NUCLEOPROTEIN
D: NUCLEOPROTEIN
E: NUCLEOPROTEIN
F: NUCLEOPROTEIN
G: NUCLEOPROTEIN
H: NUCLEOPROTEIN
I: NUCLEOPROTEIN
J: NUCLEOPROTEIN
K: NUCLEOPROTEIN
L: NUCLEOPROTEIN
M: NUCLEOPROTEIN
N: NUCLEOPROTEIN
O: NUCLEOPROTEIN
P: NUCLEOPROTEIN
Q: NUCLEOPROTEIN
R: NUCLEOPROTEIN
S: NUCLEOPROTEIN
T: NUCLEOPROTEIN
U: NUCLEOPROTEIN
V: NUCLEOPROTEIN
W: NUCLEOPROTEIN
X: NUCLEOPROTEIN
a: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
c: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
e: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
g: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
i: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
k: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
m: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
o: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
q: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
s: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
u: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
w: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')


分子量 (理論値)分子数
合計 (水以外)699,15936
ポリマ-699,15936
非ポリマー00
26,5721475
1
S: NUCLEOPROTEIN
T: NUCLEOPROTEIN
U: NUCLEOPROTEIN
V: NUCLEOPROTEIN
W: NUCLEOPROTEIN
X: NUCLEOPROTEIN
s: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
u: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
w: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')


分子量 (理論値)分子数
合計 (水以外)174,7769
ポリマ-174,7769
非ポリマー00
1086
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area29420 Å2
ΔGint-259.6 kcal/mol
Surface area61760 Å2
手法PISA
2
M: NUCLEOPROTEIN
N: NUCLEOPROTEIN
O: NUCLEOPROTEIN
P: NUCLEOPROTEIN
Q: NUCLEOPROTEIN
R: NUCLEOPROTEIN
m: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
o: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
q: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')


分子量 (理論値)分子数
合計 (水以外)174,8049
ポリマ-174,8049
非ポリマー00
1086
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area29290 Å2
ΔGint-259.8 kcal/mol
Surface area61720 Å2
手法PISA
3
G: NUCLEOPROTEIN
H: NUCLEOPROTEIN
I: NUCLEOPROTEIN
J: NUCLEOPROTEIN
K: NUCLEOPROTEIN
L: NUCLEOPROTEIN
g: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
i: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
k: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')


分子量 (理論値)分子数
合計 (水以外)174,8049
ポリマ-174,8049
非ポリマー00
1086
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area29470 Å2
ΔGint-258.7 kcal/mol
Surface area61790 Å2
手法PISA
4
A: NUCLEOPROTEIN
B: NUCLEOPROTEIN
C: NUCLEOPROTEIN
D: NUCLEOPROTEIN
E: NUCLEOPROTEIN
F: NUCLEOPROTEIN
a: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
c: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')
e: RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')


分子量 (理論値)分子数
合計 (水以外)174,7779
ポリマ-174,7779
非ポリマー00
1086
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area29260 Å2
ΔGint-250.4 kcal/mol
Surface area61800 Å2
手法PISA
単位格子
Length a, b, c (Å)98.777, 127.837, 170.467
Angle α, β, γ (deg.)82.10, 79.75, 74.49
Int Tables number1
Space group name H-MP1
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID
11
21
31
41
12
22
32
42
13
23
33
43
14
24
34
44
54
64
74
84
15
25
35
45

NCSドメイン領域:
Dom-IDComponent-IDEns-IDSelection details
111CHAIN A AND (RESSEQ 6:32 OR RESSEQ 34:252)
211CHAIN C AND (RESSEQ 6:32 OR RESSEQ 34:252)
311CHAIN E AND (RESSEQ 6:32 OR RESSEQ 34:252)
411CHAIN G AND (RESSEQ 6:32 OR RESSEQ 34:252)
112CHAIN B AND (RESSEQ 6:252)
212CHAIN D AND (RESSEQ 6:252)
312CHAIN F AND (RESSEQ 6:252)
412CHAIN H AND (RESSEQ 6:252)
113CHAIN I AND (RESSEQ 6:252)
213CHAIN K AND (RESSEQ 6:252)
313CHAIN M AND (RESSEQ 6:252)
413CHAIN O AND (RESSEQ 6:252)
114CHAIN J AND (RESSEQ 18:252)
214CHAIN L AND (RESSEQ 18:252)
314CHAIN N AND (RESSEQ 18:252)
414CHAIN P AND (RESSEQ 18:252)
514CHAIN R AND (RESSEQ 18:252)
614CHAIN T AND (RESSEQ 18:252)
714CHAIN V AND (RESSEQ 18:252)
814CHAIN X AND (RESSEQ 18:252)
115CHAIN Q AND (RESSEQ 6:252)
215CHAIN S AND (RESSEQ 6:252)
315CHAIN U AND (RESSEQ 6:251)
415CHAIN W AND (RESSEQ 6:252)

NCSアンサンブル:
ID
1
2
3
4
5

-
要素

#1: タンパク質 ...
NUCLEOPROTEIN / 核タンパク質 / NUCLEOCAPSID PROTEIN / PROTEIN N / RIBONUCLEOPROTEIN


分子量: 27740.109 Da / 分子数: 21 / 由来タイプ: 組換発現 / 由来: (組換発現) TOSCANA VIRUS (ウイルス) / 解説: SYNTHETIC / 発現宿主: ESCHERICHIA COLI (大腸菌) / 株 (発現宿主): BL21(DE3) / Variant (発現宿主): ROSETTA / 参照: UniProt: P21701
#2: タンパク質 NUCLEOPROTEIN / 核タンパク質 / NUCLEOCAPSID PROTEIN / PROTEIN N / RIBONUCLEOPROTEIN


分子量: 27712.096 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) TOSCANA VIRUS (ウイルス) / 解説: SYNTHETIC / 発現宿主: ESCHERICHIA COLI (大腸菌) / 株 (発現宿主): BL21(DE3) / Variant (発現宿主): ROSETTA / 参照: UniProt: P21701
#3: タンパク質 NUCLEOPROTEIN / 核タンパク質 / NUCLEOCAPSID PROTEIN / PROTEIN N / RIBONUCLEOPROTEIN


分子量: 27741.096 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) TOSCANA VIRUS (ウイルス) / 解説: SYNTHETIC / 発現宿主: ESCHERICHIA COLI (大腸菌) / 株 (発現宿主): BL21(DE3) / Variant (発現宿主): ROSETTA / 参照: UniProt: P21701
#4: RNA鎖
RNA (5'-R(*UP*GP*UP*GP*UP*UP*UP*CP*UP)-3')


分子量: 2787.631 Da / 分子数: 12 / 由来タイプ: 合成 / 詳細: UGUGUUUCU / 由来: (合成) SYNTHETIC CONSTRUCT (人工物)
#5: 水 ChemComp-HOH / water /


分子量: 18.015 Da / 分子数: 1475 / 由来タイプ: 天然 / : H2O

-
実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 2.9 Å3/Da / 溶媒含有率: 58 % / 解説: NONE
結晶化手法: 蒸気拡散法, ハンギングドロップ法 / pH: 5 / 詳細: 11% PEG 3350, 0.1 M SODIUM MALONATE, PH 4.5-5.2

-
データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: BESSY / ビームライン: 14.2 / 波長: 0.918
検出器タイプ: MARMOSAIC 225 mm CCD / 検出器: CCD / 日付: 2012年6月22日 / 詳細: MIRROR
放射モノクロメーター: DOUBLE SI 111 CRYSTAL / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.918 Å / 相対比: 1
反射解像度: 2.6→34.4 Å / Num. obs: 229780 / % possible obs: 94.7 % / Observed criterion σ(I): -3 / 冗長度: 2.2 % / Biso Wilson estimate: 38.06 Å2 / Rmerge(I) obs: 0.09 / Net I/σ(I): 11.2
反射 シェル解像度: 2.59→2.61 Å / 冗長度: 2.2 % / Rmerge(I) obs: 0.555 / Mean I/σ(I) obs: 2.1 / % possible all: 79.7

-
解析

ソフトウェア
名称バージョン分類
PHENIX(PHENIX.REFINE)精密化
XDSデータ削減
XDSデータスケーリング
PHASER位相決定
精密化構造決定の手法: 分子置換 / 解像度: 2.598→34.467 Å / SU ML: 0.32 / σ(F): 1.99 / 位相誤差: 25.66 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2396 11464 5 %
Rwork0.2031 --
obs0.205 229734 94.74 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso mean: 46.8 Å2
精密化ステップサイクル: LAST / 解像度: 2.598→34.467 Å
タンパク質核酸リガンド溶媒全体
原子数45771 2196 0 1475 49442
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00548970
X-RAY DIFFRACTIONf_angle_d0.84766569
X-RAY DIFFRACTIONf_dihedral_angle_d14.53918649
X-RAY DIFFRACTIONf_chiral_restr0.0667737
X-RAY DIFFRACTIONf_plane_restr0.0038146
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDタイプRms dev position (Å)
11A1875X-RAY DIFFRACTIONPOSITIONAL
12C1875X-RAY DIFFRACTIONPOSITIONAL0.034
13E1886X-RAY DIFFRACTIONPOSITIONAL0.033
14G1886X-RAY DIFFRACTIONPOSITIONAL0.019
21B1895X-RAY DIFFRACTIONPOSITIONAL
22D1895X-RAY DIFFRACTIONPOSITIONAL0.035
23F1895X-RAY DIFFRACTIONPOSITIONAL0.028
24H1890X-RAY DIFFRACTIONPOSITIONAL0.034
31I1894X-RAY DIFFRACTIONPOSITIONAL
32K1894X-RAY DIFFRACTIONPOSITIONAL0.025
33M1894X-RAY DIFFRACTIONPOSITIONAL0.021
34O1894X-RAY DIFFRACTIONPOSITIONAL0.022
41J1795X-RAY DIFFRACTIONPOSITIONAL
42L1795X-RAY DIFFRACTIONPOSITIONAL0.029
43N1795X-RAY DIFFRACTIONPOSITIONAL0.025
44P1795X-RAY DIFFRACTIONPOSITIONAL0.041
45R1795X-RAY DIFFRACTIONPOSITIONAL0.028
46T1795X-RAY DIFFRACTIONPOSITIONAL0.041
47V1795X-RAY DIFFRACTIONPOSITIONAL0.027
48X1784X-RAY DIFFRACTIONPOSITIONAL0.023
51Q1888X-RAY DIFFRACTIONPOSITIONAL
52S1888X-RAY DIFFRACTIONPOSITIONAL0.025
53U1884X-RAY DIFFRACTIONPOSITIONAL0.028
54W1888X-RAY DIFFRACTIONPOSITIONAL0.037
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.5983-2.62780.35382180.29344570X-RAY DIFFRACTION59
2.6278-2.65880.31852850.27725626X-RAY DIFFRACTION73
2.6588-2.69120.32253110.27886100X-RAY DIFFRACTION80
2.6912-2.72520.3253640.27097116X-RAY DIFFRACTION92
2.7252-2.76110.30733980.26497441X-RAY DIFFRACTION98
2.7611-2.79890.29453860.26337516X-RAY DIFFRACTION98
2.7989-2.83880.32844290.26157537X-RAY DIFFRACTION98
2.8388-2.88120.29084060.26657414X-RAY DIFFRACTION98
2.8812-2.92620.31133860.2767552X-RAY DIFFRACTION98
2.9262-2.97410.34224200.26697505X-RAY DIFFRACTION98
2.9741-3.02540.3013890.25837504X-RAY DIFFRACTION98
3.0254-3.08040.28084030.2577466X-RAY DIFFRACTION98
3.0804-3.13960.31424020.25757476X-RAY DIFFRACTION98
3.1396-3.20360.28843700.25737628X-RAY DIFFRACTION98
3.2036-3.27320.29354080.25297443X-RAY DIFFRACTION98
3.2732-3.34930.28374150.23797488X-RAY DIFFRACTION98
3.3493-3.4330.26643700.2347546X-RAY DIFFRACTION98
3.433-3.52570.25523810.22527494X-RAY DIFFRACTION98
3.5257-3.62940.28743750.22177530X-RAY DIFFRACTION98
3.6294-3.74640.23254130.20157467X-RAY DIFFRACTION98
3.7464-3.88010.22114030.19447524X-RAY DIFFRACTION98
3.8801-4.03520.20753950.17817452X-RAY DIFFRACTION98
4.0352-4.21860.19233950.16237509X-RAY DIFFRACTION98
4.2186-4.44060.18113650.14657521X-RAY DIFFRACTION98
4.4406-4.71810.19344010.15517548X-RAY DIFFRACTION98
4.7181-5.08140.20433890.16457450X-RAY DIFFRACTION98
5.0814-5.59080.2074170.17187519X-RAY DIFFRACTION98
5.5908-6.39530.20173940.16927523X-RAY DIFFRACTION98
6.3953-8.04050.17323990.14937466X-RAY DIFFRACTION97
8.0405-34.46960.15293770.1397339X-RAY DIFFRACTION95
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.96650.47380.02440.44190.08831.6203-0.02260.2210.46-0.3665-0.14110.2883-0.5233-0.27740.06140.94810.1137-0.03620.61430.23130.6445-3.0623118.74473.1927
20.3135-0.0042-0.20370.99730.13831.16740.02750.1520.11550.34430.2040.1982-0.5608-0.2838-0.17190.42740.07810.14880.33360.01590.38745.3795104.970244.0323
32.10660.498-0.07621.72350.25992.0721-0.1128-0.03610.18610.41240.08680.4725-0.0761-0.15210.01420.38890.06530.15060.30440.08140.4042.2654102.856944.5715
40.6379-1.04570.19542.0883-0.32821.02550.07450.18620.02890.6430.0049-0.1364-0.35980.3351-0.02590.39350.0110.03220.35080.03120.222419.786297.246442.0951
51.53890.0961-0.03811.1432-0.01011.0060.14060.2223-0.0304-0.03270.01420.01860.1248-0.0137-0.03430.2330.01140.01680.2803-0.03550.241520.492193.955930.0265
61.65320.7959-0.12581.7703-0.02271.7231-0.10940.5610.0823-0.27560.35890.1137-0.0667-0.1142-0.24330.31580.02830.05970.39460.04250.280613.807797.573526.5392
72.99321.08180.10522.94620.85492.3302-0.09320.13630.03910.23240.0518-0.08560.23970.36650.08210.3559-0.02870.06550.4165-0.08380.363427.880595.036425.2796
80.73470.6057-0.45331.0545-0.28770.44580.4238-0.16260.69010.2529-0.04450.4434-0.53170.1668-0.31830.449-0.02120.07090.30170.01210.58728.895696.308654.2825
92.0764-0.7153-0.57561.26130.50590.6831-0.0297-0.1106-0.0710.10190.055-0.08390.02810.109-0.00180.27230.0099-0.02690.2291-0.02630.328210.90569.05360.6071
102.90990.26030.22543.73060.55493.1923-0.0576-0.5426-0.09450.72410.12050.0924-0.03470.0417-0.05930.28220.0320.03350.3754-0.05140.25852.681169.086872.1367
111.8511-0.1166-0.40011.8215-0.1510.9654-0.00620.05550.169-0.0730.07680.11680.139-0.0904-0.00390.22-0.0057-0.06610.164-0.00690.2556-2.461341.736937.2709
121.6102-0.75440.2761.73580.10761.28520.00360.17550.2615-0.0581-0.0686-0.1049-0.11290.18430.03080.2798-0.0004-0.01580.23150.00760.485812.767551.860937.6153
132.90870.84671.80230.6627-0.72212.7888-0.32080.4818-0.2041-0.05720.40250.2248-0.0690.0224-0.10450.50380.021-0.0540.4142-0.03120.4169-9.419634.675327.6514
143.28550.4552-0.25261.95280.04131.2808-0.09680.1317-0.23340.02230.08360.04030.317-0.29770.03780.4724-0.1842-0.06930.52190.0530.3811-8.833240.26920.1734
151.55660.21660.06110.81570.64210.54150.00610.044-0.3765-0.1675-0.21860.29490.2297-0.32620.21990.5117-0.1522-0.11350.70320.08710.8168-19.995750.5511-10.0666
161.43380.04410.08821.87110.29591.3616-0.1621-0.15130.2376-0.49620.1520.4923-0.5556-0.17610.09810.54090.0126-0.1590.60840.10090.5595-9.237183.3965-13.8882
171.9337-0.2612-0.45621.9638-0.07841.8917-0.2819-0.01450.0681-0.27450.41830.5246-0.0073-0.9014-0.09450.4796-0.0228-0.13120.63960.13640.5027-14.555379.1598-12.1953
182.22821.34271.43852.31060.32191.986-0.04980.4786-0.0581-0.684-0.1965-0.6357-0.12710.45780.12310.6044-0.04280.01260.63170.02730.53463.783577.4894-14.582
191.6947-0.351-0.10131.17870.00681.3579-0.1781-0.2895-0.28180.2680.1158-0.18430.00670.05160.02070.3696-0.0721-0.05580.53420.12110.48627.200168.0032-7.1487
201.4402-0.2641-0.31371.96310.0861.9151-0.251-0.0681-0.19440.17740.22260.35240.34890.03170.00850.3905-0.0182-0.04820.45640.09710.42160.032164.0312-5.4936
212.577-0.4827-0.86442.14130.55572.7859-0.0268-0.0664-0.4048-0.16440.1165-0.3751-0.26950.5189-0.02350.4782-0.0675-0.0190.59450.05940.564813.793462.4986-9.272
221.4357-0.3282-0.29512.09140.33051.99160.03740.48650.2482-0.66680.24360.12560.0579-0.3095-0.41640.8295-0.1836-0.03780.59730.13920.6943-3.324976.9678-22.1748
231.61470.0597-0.61571.67120.58272.3881-0.19840.00220.0442-0.5213-0.05620.56420.131-0.32110.18370.46240.0593-0.13050.53560.10380.5071-7.9499108.92086.307
242.1897-0.6871-0.24831.9935-0.06661.39670.1620.42550.2794-0.4773-0.0773-0.0216-0.0607-0.1174-0.0860.46670.01150.04190.54790.13490.302913.5146106.31020.642
250.9306-0.07620.1031.2853-0.15620.46210.02320.03310.02040.1012-0.1513-0.56540.00260.02850.12180.251-0.0075-0.01910.30840.00140.278762.20348.464243.4595
261.61890.0242-0.39231.7973-0.31011.565-0.0415-0.10960.05520.0994-0.0415-0.171-0.07340.19050.09360.3044-0.0302-0.08780.329-0.00560.306861.531165.461545.0082
271.7153-0.15880.0140.4740.66881.38220.10270.1747-0.1287-0.1313-0.12750.1454-0.1512-0.15880.04420.27010.0656-0.04150.2461-0.01490.277445.245959.09538.7759
281.85070.375-0.95562.41-0.24883.6354-0.00180.452-0.21670.11280.09130.63370.0645-0.06640.02980.22420.0678-0.09910.3349-0.07320.408834.817159.716941.909
291.07111.7035-1.26382.153-1.34420.91980.2073-0.17540.00730.2039-0.1753-0.10240.1270.3115-0.07770.43040.0321-0.04710.3724-0.03190.448864.84676.263946.4892
302.2936-0.0639-0.39710.60990.20881.4977-0.00180.06430.12680.07280.0682-0.16720.12590.0016-0.07340.28390.00530.04050.2052-0.03890.300159.266497.795529.4055
311.76260.3763-0.00981.94970.44633.13430.26940.03430.1038-0.08340.2134-0.5226-0.31080.6053-0.27830.4014-0.06180.05890.3767-0.07110.527771.6048104.946729.8058
320.5109-0.14991.58510.3661-0.76164.4966-0.22530.0103-0.1760.0395-0.2758-0.29480.110.76180.20910.4271-0.05010.08850.4412-0.03450.285663.6246100.1493-4.394
330.89580.3718-0.64961.0623-0.94650.93980.13280.06720.23040.50630.1310.1321-0.3552-0.0729-0.1740.2837-0.06480.0410.40250.01320.323453.448795.1296-14.6218
341.56050.55531.36181.7957-0.47241.52450.26830.64250.1432-0.20230.0715-0.14330.0788-0.1649-0.13840.3798-0.01830.09010.5241-0.03120.277358.140185.5268-17.893
352.8382-0.8512-0.00362.3007-0.14791.7457-0.3061-0.3679-0.01190.4136-0.01910.12380.48640.6180.2260.4131-0.03150.05690.3977-0.01460.213261.191491.7556-5.2
361.96192.00340.26132.7280.56761.1998-0.08780.10090.0451-0.20020.08790.39410.0355-0.40150.06250.4142-0.07490.05080.51530.09180.343142.165692.0423-8.4244
371.3370.2093-0.06511.2123-0.24440.9735-0.051-0.2244-0.1283-0.09910.11460.08590.3324-0.24780.00340.3773-0.08130.07630.38250.04490.326142.121786.35444.7131
382.2717-0.1908-1.10858.2026-3.63123.67220.4044-0.15550.37150.4696-0.525-0.2151-0.0782-0.0459-0.13830.4374-0.07370.04680.4782-0.10640.277752.258696.15018.6863
392.13870.2019-0.97491.6007-0.03751.56780.9141-0.21941.10090.347-0.19910.2573-0.5675-0.4-0.20670.48690.03590.1530.52190.02490.536338.7665104.73214.8287
400.39350.1028-0.34295.1978-2.18412.7645-0.157-0.8918-0.18330.6620.0050.91410.4603-0.1936-0.24080.4636-0.07490.17610.49420.03720.438434.079686.814110.4126
41-0.2751-0.5854-0.21033.53812.69141.5970.38420.08080.1333-0.0326-0.2793-0.6007-0.2204-0.3454-0.11750.6629-0.07910.14660.48950.04670.550852.325386.694-20.2026
422.76980.0129-0.84621.3949-0.87841.9506-0.16230.20090.0038-0.05140.13120.0536-0.01560.03210.01980.4475-0.0736-0.01360.36930.0160.271940.167362.322-26.9916
431.614-0.10080.92230.12290.3772.43010.15240.49760.1316-0.51810.0681-0.38320.6128-0.1485-0.24410.65770.01270.17020.69290.07280.394148.402959.7972-38.5397
443.112-0.75740.18321.26260.00430.0281-0.12441.18290.3943-0.59920.2154-0.27210.84010.47440.20021.0240.1347-0.01150.4421-0.07020.181946.84330.1813-17.1663
451.39320.0650.10650.6509-0.25031.1411-0.0751-0.1831-0.3088-0.11-0.0715-0.28730.76520.0423-0.01920.62790.0033-0.02080.4468-0.03980.334846.087324.2128-0.5977
463.4323-0.05750.78732.9125-0.10821.53870.06380.10390.2335-0.71660.0582-0.5780.23260.11750.00490.6530.03790.04560.4251-0.00760.360248.457733.1366-9.069
471.2361-0.674-0.060.71860.01851.95930.00680.05990.03080.17780.19810.10670.4791-0.2277-0.0820.4925-0.05210.0020.39730.00130.29229.740737.7861-0.8344
481.62760.07310.01011.699-0.16692.0515-0.11790.09490.27250.04190.13190.1001-0.2524-0.1988-0.03990.4864-0.0384-0.04560.34470.01080.262330.749746.3942-5.1687
491.0429-0.38161.5363-0.085-0.5922.77880.04070.248-0.2841-0.31160.2170.1140.142-0.0409-0.10850.7147-0.0716-0.08430.498-0.0660.38244.346823.09174.0916
501.65470.3558-0.04673.37860.2211.5189-0.06580.1678-0.088-0.4890.0555-0.140.20210.37530.03550.29870.07830.03720.29410.00340.287860.013229.293130.3287
511.5167-0.0057-0.06011.71450.11571.0251-0.11370.13280.2123-0.07650.06570.249-0.10610.03210.0260.23430.034-0.02830.2294-0.00520.269539.623334.77434.2913
523.0504-1.3572-0.64641.4613-0.58811.8665-0.00410.1991-0.4012-0.2573-0.10010.51130.2591-0.1940.15690.2575-0.0149-0.06820.2076-0.04060.335135.708323.89532.5427
531.37650.38590.44622.14132.76793.58940.0605-0.0162-0.9133-0.26740.42240.24240.99170.4155-0.44540.92390.0692-0.07490.276-0.01580.87493.3304-44.4478115.2441
540.90270.0441-0.05172.9507-0.45150.4807-0.0119-0.28070.1170.22480.21260.38150.25950.2446-0.13450.50910.0298-0.04540.6120.02930.40589.7759-24.2583127.5664
554.23030.31211.55870.89520.0583.277-0.3084-0.5527-0.27620.64050.0941-0.60230.10990.61970.24660.49770.0062-0.07930.46010.10210.488215.4138-5.6092139.0974
561.51850.15620.06822.67930.26091.3152-0.1935-0.07740.14830.4257-0.0518-0.3881-0.05460.44950.07640.3591-0.0645-0.07780.50930.07670.344214.82329.5465134.1446
572.916-0.3845-0.92011.1620.73922.3389-0.38250.6065-0.0080.27080.1016-0.1340.5231-0.07080.27250.3218-0.00640.00190.5869-0.01020.248314.2328-1.9739129.2408
580.4403-0.40020.70642.6618-1.44172.11870.1755-0.48060.31240.5048-0.27920.65-0.22180.07070.09540.2799-0.03230.06170.4232-0.0770.3856-1.25139.2249131.9542
590.9602-0.2176-0.07320.08490.26360.7551-0.00490.3716-0.05590.1162-0.10290.1890.0196-0.1995-0.02620.4116-0.02510.1030.47320.01950.4395-7.70653.68125.5133
601.20920.0586-0.27261.3254-0.32442.1051-0.05010.54790.2006-0.17120.05930.0978-0.2673-0.3108-0.0620.31750.02340.00780.51380.03250.2699-3.42762.0621115.5657
611.59750.5999-1.87980.3809-0.04215.0210.1479-0.06330.21530.06430.2388-0.03520.3421-0.1079-0.19120.3427-0.0367-0.04960.39850.00680.4397-0.3623-9.9239125.2894
621.60750.27790.10290.8010.71111.34740.2062-0.6253-0.08370.3426-0.08820.29010.3692-0.4928-0.09740.4-0.11450.03890.44060.01990.3842-12.758-5.1462134.9992
631.30410.8482-0.92410.6718-1.16015.4865-0.01930.3320.0815-0.26770.14210.5143-0.0941-0.3322-0.00640.2876-0.0231-0.01230.64370.04960.3142-14.77062.2604117.2415
640.48171.0743-0.16091.3434-0.10510.69810.1605-0.1852-0.01810.4179-0.2863-0.17490.11710.29350.11340.50580.0599-0.01510.54880.12180.437413.827615.6072134.4672
652.2306-0.25250.17021.1951-0.09831.3612-0.058-0.37220.13840.1818-0.0239-0.106-0.10470.06930.08620.3708-0.0624-0.08160.4465-0.01210.324612.658439.0066118.2416
661.08-0.40.00270.77830.03931.5145-0.1615-0.17450.29880.39760.2408-0.0515-0.31980.62830.05420.5743-0.0652-0.12730.6646-0.07450.409424.610344.447115.6952
671.4631-0.1239-0.01131.49940.24641.462-0.10260.06820.1057-0.39620.1349-0.2696-0.3360.2708-0.02470.4191-0.07550.04740.3147-0.0240.271415.888537.049776.933
681.4668-0.1525-0.36931.445-0.23311.9439-0.121-0.13850.01960.1176-0.10670.237-0.0281-0.04230.1890.3228-0.0587-0.04790.3185-0.01060.3041.3334.54991.3743
692.2005-1.1630.00722.39530.05571.8955-0.2018-0.13450.1496-0.3577-0.20230.191-0.1608-0.22760.09730.43530.0381-0.06850.3614-0.00170.391-8.760638.427493.0739
700.0646-0.508-0.28750.89321.21051.71150.1339-0.04640.1581-0.276-0.0675-0.415-0.53960.1314-0.03760.36610.0180.01620.3287-0.00280.416114.182119.66163.6744
711.8445-0.05-0.07720.4290.20670.7864-0.0885-0.0382-0.0312-0.02560.0473-0.0699-0.01290.03880.03660.25030.02550.00510.2396-0.02010.27493.45156.487557.1637
722.08030.4075-1.29370.8707-0.17321.59620.17740.19880.15210.00880.00520.0848-0.2645-0.1642-0.17770.25710.07830.00010.2147-0.0330.3107-6.0313.653756.8131
731.39220.43980.22823.4124-0.26962.1329-0.13830.4843-0.1109-0.60210.2179-0.3219-0.04310.1578-0.07920.34120.03090.09240.36850.03130.328612.11724.987147.4235
741.29340.2743-1.23633.9445-0.61392.0562-0.38990.2204-0.09-0.82550.5921-0.80320.43250.13580.1170.3230.00350.05310.3387-0.01740.38917.2699-24.588766.3164
752.3711-0.15950.05660.9719-0.19341.7129-0.06160.0475-0.4340.12590.1679-0.25980.63890.2629-0.01180.46560.0464-0.05730.2672-0.03440.43543.4508-31.754282.0029
763.3147-0.07350.63962.50070.022.1099-0.1250.10780.2253-0.06210.0197-0.91850.11940.0499-0.04620.2079-0.0057-0.04670.2276-0.00060.37887.2811-22.245574.7969
771.1241-0.0652-0.48741.42240.87962.7343-0.0352-0.28860.0609-0.0052-0.257-0.0390.3331-0.81160.14080.2808-0.0547-0.02280.3534-0.02810.3706-10.8778-24.244280.9658
781.0951-0.1808-0.47191.5332-0.21051.17250.0516-0.31940.3540.2050.01690.1352-0.1183-0.1883-0.04240.2275-0.0104-0.0020.2908-0.07740.3102-9.9033-9.970881.3679
792.72711.44381.51133.44652.50744.2301-0.2220.44830.2788-0.48770.06230.305-0.4659-0.60840.04020.27860.01640.03220.32480.01480.3758-3.1211-10.331968.3586
802.9682-0.3459-0.17522.1411-0.46441.79690.3761-0.0335-0.152-0.2526-0.18090.03790.0644-0.46170.04240.258-0.0146-0.0490.3051-0.00240.3682-18.2912-16.175565.9345
811.84041.58591.55063.77812.06262.7589-0.1241-0.22490.76330.8043-0.27340.4876-0.1109-0.63770.07490.23680.1154-0.0620.3778-0.11320.5368-18.0171-4.292981.1454
821.2161-0.3910.24940.88430.39372.78270.05720.0126-0.34910.02710.1148-0.02260.49370.3728-0.16380.462-0.0689-0.04850.3489-0.0560.3964-5.587-31.379578.4769
832.3334-0.56650.17721.54340.52451.9940.0831-0.007-0.33180.0520.01490.06470.51520.1028-0.11870.45330.0354-0.05410.29940.03850.2872-1.9033-29.9683114.2336
841.18750.47170.26351.71760.73961.24580.0192-0.5295-0.3530.65770.0980.2258-0.0405-0.61660.02290.70740.08930.29470.46210.07250.487446.02369.8723147.588
851.33590.3528-0.50051.2406-0.31161.81510.05560.09460.04730.12660.1850.12720.1571-0.6009-0.17420.3021-0.03450.02690.42240.06770.297941.1575-18.2129117.0695
860.78461.14131.53351.63822.19433.00650.0213-0.02650.2783-0.5143-0.0542-0.07020.1084-0.1958-0.04320.4517-0.02770.00720.46120.1050.413339.2762-13.2686100.1236
872.2796-0.16820.69341.8788-0.06191.389-0.15580.03870.1477-0.17580.2010.2473-0.0779-0.4586-0.05310.3234-0.1270.00560.4780.07060.378538.3741-14.9198111.1711
880.72660.1996-0.46661.3388-0.30433.78450.09290.1996-0.4062-0.04030.0949-0.17610.6598-0.1312-0.04220.35750.00460.00850.37590.00110.415256.1791-18.9071107.944
890.8225-0.10170.16881.08480.09760.98750.0841-0.00780.2704-0.08380.0412-0.0525-0.06280.0173-0.05130.3282-0.03740.10080.39670.01070.375960.5552-5.27111.4375
902.4078-0.14010.67871.8287-0.17631.39210.0192-0.17070.1487-0.04590.0703-0.23220.1638-0.0116-0.14890.333-0.03380.0390.3772-0.00390.437165.5528-12.0586120.2317
910.30420.27221.10790.2567-0.33183.51680.1226-0.03230.0670.1754-0.16180.13680.56690.2894-0.05040.53020.09050.07640.59620.17080.540441.5245-22.08101.3759
922.0661-0.2681-0.28621.1788-0.09480.8995-0.009-0.0169-0.1870.0306-0.03370.07250.0726-0.08470.04250.2483-0.0077-0.00410.23530.01020.360347.7645-14.619974.0982
931.3644-0.2765-0.31991.74230.63561.01910.03670.3179-0.2524-0.10540.04830.40020.306-0.0691-0.06210.315-0.0693-0.07480.2887-0.0240.396837.0745-12.797166.6513
941.4938-0.03270.1070.97990.29541.6865-0.0795-0.05140.1501-0.00620.05460.1318-0.12360.02280.02050.20290.0321-0.00330.1946-0.01310.266450.670325.06462.5522
951.8957-0.6785-0.36661.95980.0681.4377-0.027-0.1719-0.1020.06030.0587-0.05310.06350.17530.00460.13680.0106-0.01060.19270.00420.217364.640610.139271.5455
96-0.53680.08170.60731.0021.18521.8777-0.06260.2274-0.0116-0.0749-0.21680.011-0.2605-0.61920.14380.38760.0668-0.04910.5039-0.08250.405152.148543.540274.4425
972.2348-0.4369-0.15471.4175-0.04761.6742-0.12040.12010.2366-0.0006-0.0034-0.044-0.23030.01210.08010.37340.0123-0.06150.2231-0.01480.252666.294352.331283.3706
980.91250.2226-0.33461.4499-0.07612.97380.05590.48320.5311-0.2813-0.36740.1832-0.501-0.75840.07750.76480.3343-0.1230.51720.04710.435454.509564.193182.2843
990.4615-0.1948-0.41171.36510.11452.88650.29230.0791-0.1094-0.035-0.29330.1586-0.6333-0.46750.04550.46010.07770.02070.3569-0.05390.424454.549555.732117.3138
1002.14950.547-0.54731.4021-0.23791.22140.0562-0.1808-0.00650.1752-0.11140.1045-0.0799-0.10250.03160.31620.008-0.02970.318-0.02930.210563.856341.1654120.3174
1011.7110.1801-0.33051.49320.21020.8697-0.05140.1664-0.0456-0.18160.0483-0.1706-0.00780.0387-0.00950.39510.0303-0.00550.332-0.02060.24672.718440.571107.942
1021.3380.9846-1.56652.2047-0.8071.19610.1719-0.4141-0.01350.3897-0.22490.3035-0.29460.24180.02750.483-0.0276-0.03860.46190.0140.432157.178438.2447133.3538
1031.7206-0.2715-0.22491.34040.01980.3516-0.09730.05930.05810.18870.11370.069-0.16830.0623-0.00250.4275-0.01520.11650.43420.03830.297156.772610.4191138.188
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1CHAIN A AND (RESID 4 THROUGH 30 )
2X-RAY DIFFRACTION2CHAIN A AND (RESID 31 THROUGH 81 )
3X-RAY DIFFRACTION3CHAIN A AND (RESID 82 THROUGH 116 )
4X-RAY DIFFRACTION4CHAIN A AND (RESID 117 THROUGH 134 )
5X-RAY DIFFRACTION5CHAIN A AND (RESID 135 THROUGH 186 )
6X-RAY DIFFRACTION6CHAIN A AND (RESID 187 THROUGH 226 )
7X-RAY DIFFRACTION7CHAIN A AND (RESID 227 THROUGH 252 )
8X-RAY DIFFRACTION8CHAIN B AND (RESID 4 THROUGH 51 )
9X-RAY DIFFRACTION9CHAIN B AND (RESID 52 THROUGH 252 )
10X-RAY DIFFRACTION10CHAIN C AND (RESID 3 THROUGH 30 )
11X-RAY DIFFRACTION11CHAIN C AND (RESID 31 THROUGH 163 )
12X-RAY DIFFRACTION12CHAIN C AND (RESID 164 THROUGH 252 )
13X-RAY DIFFRACTION13CHAIN D AND (RESID 4 THROUGH 51 )
14X-RAY DIFFRACTION14CHAIN D AND (RESID 52 THROUGH 252 )
15X-RAY DIFFRACTION15CHAIN E AND (RESID 4 THROUGH 51 )
16X-RAY DIFFRACTION16CHAIN E AND (RESID 52 THROUGH 81 )
17X-RAY DIFFRACTION17CHAIN E AND (RESID 82 THROUGH 116 )
18X-RAY DIFFRACTION18CHAIN E AND (RESID 117 THROUGH 134 )
19X-RAY DIFFRACTION19CHAIN E AND (RESID 135 THROUGH 186 )
20X-RAY DIFFRACTION20CHAIN E AND (RESID 187 THROUGH 226 )
21X-RAY DIFFRACTION21CHAIN E AND (RESID 227 THROUGH 252 )
22X-RAY DIFFRACTION22CHAIN F AND (RESID 4 THROUGH 30 )
23X-RAY DIFFRACTION23CHAIN F AND (RESID 31 THROUGH 125 )
24X-RAY DIFFRACTION24CHAIN F AND (RESID 126 THROUGH 252 )
25X-RAY DIFFRACTION25CHAIN G AND (RESID 4 THROUGH 81 )
26X-RAY DIFFRACTION26CHAIN G AND (RESID 82 THROUGH 134 )
27X-RAY DIFFRACTION27CHAIN G AND (RESID 135 THROUGH 226 )
28X-RAY DIFFRACTION28CHAIN G AND (RESID 227 THROUGH 252 )
29X-RAY DIFFRACTION29CHAIN H AND (RESID 4 THROUGH 51 )
30X-RAY DIFFRACTION30CHAIN H AND (RESID 52 THROUGH 252 )
31X-RAY DIFFRACTION31CHAIN I AND (RESID 4 THROUGH 30 )
32X-RAY DIFFRACTION32CHAIN I AND (RESID 31 THROUGH 51 )
33X-RAY DIFFRACTION33CHAIN I AND (RESID 52 THROUGH 69 )
34X-RAY DIFFRACTION34CHAIN I AND (RESID 70 THROUGH 95 )
35X-RAY DIFFRACTION35CHAIN I AND (RESID 96 THROUGH 116 )
36X-RAY DIFFRACTION36CHAIN I AND (RESID 117 THROUGH 134 )
37X-RAY DIFFRACTION37CHAIN I AND (RESID 135 THROUGH 202 )
38X-RAY DIFFRACTION38CHAIN I AND (RESID 203 THROUGH 216 )
39X-RAY DIFFRACTION39CHAIN I AND (RESID 217 THROUGH 237 )
40X-RAY DIFFRACTION40CHAIN I AND (RESID 238 THROUGH 252 )
41X-RAY DIFFRACTION41CHAIN J AND (RESID 4 THROUGH 51 )
42X-RAY DIFFRACTION42CHAIN J AND (RESID 52 THROUGH 252 )
43X-RAY DIFFRACTION43CHAIN K AND (RESID 2 THROUGH 30 )
44X-RAY DIFFRACTION44CHAIN K AND (RESID 31 THROUGH 51 )
45X-RAY DIFFRACTION45CHAIN K AND (RESID 52 THROUGH 95 )
46X-RAY DIFFRACTION46CHAIN K AND (RESID 96 THROUGH 116 )
47X-RAY DIFFRACTION47CHAIN K AND (RESID 117 THROUGH 163 )
48X-RAY DIFFRACTION48CHAIN K AND (RESID 164 THROUGH 252 )
49X-RAY DIFFRACTION49CHAIN L AND (RESID 3 THROUGH 51 )
50X-RAY DIFFRACTION50CHAIN L AND (RESID 52 THROUGH 125 )
51X-RAY DIFFRACTION51CHAIN L AND (RESID 126 THROUGH 202 )
52X-RAY DIFFRACTION52CHAIN L AND (RESID 203 THROUGH 252 )
53X-RAY DIFFRACTION53CHAIN M AND (RESID 5 THROUGH 19 )
54X-RAY DIFFRACTION54CHAIN M AND (RESID 20 THROUGH 36 )
55X-RAY DIFFRACTION55CHAIN M AND (RESID 37 THROUGH 51 )
56X-RAY DIFFRACTION56CHAIN M AND (RESID 52 THROUGH 95 )
57X-RAY DIFFRACTION57CHAIN M AND (RESID 96 THROUGH 116 )
58X-RAY DIFFRACTION58CHAIN M AND (RESID 117 THROUGH 134 )
59X-RAY DIFFRACTION59CHAIN M AND (RESID 135 THROUGH 163 )
60X-RAY DIFFRACTION60CHAIN M AND (RESID 164 THROUGH 202 )
61X-RAY DIFFRACTION61CHAIN M AND (RESID 203 THROUGH 216 )
62X-RAY DIFFRACTION62CHAIN M AND (RESID 217 THROUGH 237 )
63X-RAY DIFFRACTION63CHAIN M AND (RESID 238 THROUGH 252 )
64X-RAY DIFFRACTION64CHAIN N AND (RESID 4 THROUGH 51 )
65X-RAY DIFFRACTION65CHAIN N AND (RESID 52 THROUGH 252 )
66X-RAY DIFFRACTION66CHAIN O AND (RESID 5 THROUGH 36 )
67X-RAY DIFFRACTION67CHAIN O AND (RESID 37 THROUGH 134 )
68X-RAY DIFFRACTION68CHAIN O AND (RESID 135 THROUGH 226 )
69X-RAY DIFFRACTION69CHAIN O AND (RESID 227 THROUGH 252 )
70X-RAY DIFFRACTION70CHAIN P AND (RESID 4 THROUGH 81 )
71X-RAY DIFFRACTION71CHAIN P AND (RESID 82 THROUGH 186 )
72X-RAY DIFFRACTION72CHAIN P AND (RESID 187 THROUGH 252 )
73X-RAY DIFFRACTION73CHAIN Q AND (RESID 4 THROUGH 30 )
74X-RAY DIFFRACTION74CHAIN Q AND (RESID 31 THROUGH 51 )
75X-RAY DIFFRACTION75CHAIN Q AND (RESID 52 THROUGH 95 )
76X-RAY DIFFRACTION76CHAIN Q AND (RESID 96 THROUGH 116 )
77X-RAY DIFFRACTION77CHAIN Q AND (RESID 117 THROUGH 134 )
78X-RAY DIFFRACTION78CHAIN Q AND (RESID 135 THROUGH 202 )
79X-RAY DIFFRACTION79CHAIN Q AND (RESID 203 THROUGH 216 )
80X-RAY DIFFRACTION80CHAIN Q AND (RESID 217 THROUGH 237 )
81X-RAY DIFFRACTION81CHAIN Q AND (RESID 238 THROUGH 252 )
82X-RAY DIFFRACTION82CHAIN R AND (RESID 5 THROUGH 36 )
83X-RAY DIFFRACTION83CHAIN R AND (RESID 37 THROUGH 252 )
84X-RAY DIFFRACTION84CHAIN S AND (RESID 4 THROUGH 30 )
85X-RAY DIFFRACTION85CHAIN S AND (RESID 31 THROUGH 69 )
86X-RAY DIFFRACTION86CHAIN S AND (RESID 70 THROUGH 81 )
87X-RAY DIFFRACTION87CHAIN S AND (RESID 82 THROUGH 116 )
88X-RAY DIFFRACTION88CHAIN S AND (RESID 117 THROUGH 134 )
89X-RAY DIFFRACTION89CHAIN S AND (RESID 135 THROUGH 210 )
90X-RAY DIFFRACTION90CHAIN S AND (RESID 211 THROUGH 252 )
91X-RAY DIFFRACTION91CHAIN T AND (RESID 3 THROUGH 51 )
92X-RAY DIFFRACTION92CHAIN T AND (RESID 52 THROUGH 252 )
93X-RAY DIFFRACTION93CHAIN U AND (RESID 5 THROUGH 36 )
94X-RAY DIFFRACTION94CHAIN U AND (RESID 37 THROUGH 134 )
95X-RAY DIFFRACTION95CHAIN U AND (RESID 135 THROUGH 251 )
96X-RAY DIFFRACTION96CHAIN V AND (RESID 4 THROUGH 81 )
97X-RAY DIFFRACTION97CHAIN V AND (RESID 82 THROUGH 252 )
98X-RAY DIFFRACTION98CHAIN W AND (RESID 3 THROUGH 30 )
99X-RAY DIFFRACTION99CHAIN W AND (RESID 31 THROUGH 51 )
100X-RAY DIFFRACTION100CHAIN W AND (RESID 52 THROUGH 186 )
101X-RAY DIFFRACTION101CHAIN W AND (RESID 187 THROUGH 252 )
102X-RAY DIFFRACTION102CHAIN X AND (RESID 4 THROUGH 51 )
103X-RAY DIFFRACTION103CHAIN X AND (RESID 52 THROUGH 252 )

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る