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- SASDBR7: Subdomain SL2' of hepatitis C virus RNA domain 3'X at higher ioni... -

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Basic information

Entry
Database: SASBDB / ID: SASDBR7
SampleSubdomain SL2' of hepatitis C virus RNA domain 3'X at higher ionic strength
  • Subdomain SL2' of hepatitis C virus domain 3'X (RNA), SL2', Hepatitis C virus
Biological speciesHepatitis C virus
CitationDate: 2017 Jun 19
Title: Three-dimensional structure of the 3′X-tail of hepatitis C virus RNA in monomeric and dimeric states
Authors: Cantero-Camacho A / Fan L / Wang Y
Contact author
  • José Gallego (Universidad Católica de Valencia, Valencia, Spain)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #905
Type: dummy / Radius of dummy atoms: 3.00 A / Symmetry: 1 / Chi-square value: 0.346 / P-value: 0.070000
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Subdomain SL2' of hepatitis C virus RNA domain 3'X at higher ionic strength
Specimen concentration: 0.50-2.00
BufferName: 10mM Tris 0,1mM EDTA 2mM MgCl2 / pH: 7
Entity #504Name: SL2' / Type: RNA / Description: Subdomain SL2' of hepatitis C virus domain 3'X / Formula weight: 17.8 / Num. of mol.: 2 / Source: Hepatitis C virus
Sequence:
GGUGGCUCCA UCUUAGCCCU AGUCACGGCU AGCUGUGAAA GGUCCGUGAG CCGCU

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Experimental information

BeamInstrument name: Advanced Photon Source (APS) 12ID-B SAXS/WAXS
City: Argonne, IL / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.0886 Å / Dist. spec. to detc.: 2 mm
DetectorName: Pilatus 2M
Scan
Title: Subdomain SL2' of hepatitis C virus RNA domain 3'X / Measurement date: Nov 11, 2015 / Storage temperature: 27 °C / Cell temperature: 27 °C / Exposure time: 1 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0 1
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 150 /
MinMax
Q0.002 0.3
P(R) point1 150
R0 169
Result
Experimental MW: 40.1 kDa / Type of curve: extrapolated
P(R)GuinierGuinier error
Forward scattering, I00.1406 0.14 0.0004
Radius of gyration, Rg4.36 nm4.106 nm0.025

MinMaxError
D-16.9 0.06
Guinier point4 15 -

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