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- SASDBE7: ESX-5 type VII secretion system protein EccC5 (EccC5) -

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Basic information

Entry
Database: SASBDB / ID: SASDBE7
SampleESX-5 type VII secretion system protein EccC5
  • ESX-5 type VII secretion system protein EccC5 (protein), EccC5, Mycobacterium xenopi RIVM700367
Function / homology
Function and homology information


ATP hydrolysis activity / DNA binding / ATP binding / membrane
Similarity search - Function
EccCa-like, Actinobacteria / EccCb-like, Actinobacteria / FtsK domain / FtsK/SpoIIIE family / FtsK domain profile. / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / P-loop containing nucleoside triphosphate hydrolase
Similarity search - Domain/homology
FtsK domain-containing protein
Similarity search - Component
Biological speciesMycobacterium xenopi RIVM700367 (bacteria)
Contact author
  • Haydyn Mertens (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #823
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #824
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: p1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #825
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: p1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #826
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: p1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #827
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #828
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #829
Type: mix / Software: EOM (2.1) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Comment: Ensemble member of EOM selected / Chi-square value: 1.010 / P-value: 0.900000
Search similar-shape structures of this assembly by Omokage search (details)
Model #822
Type: dummy / Software: DAMMIF/DAMMIN / Radius of dummy atoms: 5.00 A / Symmetry: P1 / Comment: refined model in dammin / Chi-square value: 0.946 / P-value: 0.240000
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: ESX-5 type VII secretion system protein EccC5 / Specimen concentration: 0.39-0.39
BufferName: 20 mM Tris 200 mM NaCl 5%(v/v) Glycerol / pH: 8
Entity #460Name: EccC5 / Type: protein / Description: ESX-5 type VII secretion system protein EccC5 / Formula weight: 142.453 / Num. of mol.: 1 / Source: Mycobacterium xenopi RIVM700367 / References: UniProt: I0RZI0
Sequence: KLDAMRAQFM LMLDMLRETA QESADSMDAN YRWFHPAPTT LAAAVGSSRM WERQPDGKDL NFGVVRVGVG MTRPEVTWGE PQNMPTDIEL EPVTGKALQE FGRYQSVVYN LPKMVSLLVE PWYSLVGERE QVLGLTRAII CQLAFSHGPD HVQMIVVTSD PDRWDWVKWI ...Sequence:
KLDAMRAQFM LMLDMLRETA QESADSMDAN YRWFHPAPTT LAAAVGSSRM WERQPDGKDL NFGVVRVGVG MTRPEVTWGE PQNMPTDIEL EPVTGKALQE FGRYQSVVYN LPKMVSLLVE PWYSLVGERE QVLGLTRAII CQLAFSHGPD HVQMIVVTSD PDRWDWVKWI PHFGDPRRRD AAGNARMVYT SVREFATEQA ELFAGRGSFT PRHASSSAET PTPHHVIISD IEDPQWEYVI SSEGVDGVTF FDLTGSPLWT GAPQRVLRFT DSAGVIETLP RDRDTWMVID DNAWFFALAD QMSEADAEQF AHQMAHWRLA EAYEEIGQRV VQLGARDILS YYGIDDAGEI DFNTLWSGSG RRDLLSRSRL RIPFGNRADN GELLFLDMKS LDEGGDGPHG VMSGTTGSGK SSLVRTVIAS LMLAHPPEEL QFVLADLKGG SAVKPFDGVP HVSRIITDLE DDQALMERFL EAMWGEIARR KEICFSAGVD GAKEYNELRA RMKARGEDMP PLPMLVVVID EFYEWFRIMP TAVDVLDSIG RQGRAYWVHL MMASQTIESR AEKLMENMGY RLVLKAQTAG AAQAAGVPNA VNLPSQAGLG YFRKSGDEII RFQAEYLWRD YRRGSSYDGE EQAPLTHSVD YIRPQLFTTA FAPLEVSVSG PDGQSALPQV VDGEAVNGHR GGDDVDEEEE ALRTPKVGTV IIDQLRQIDF EPYRLWHPPL DVPVPIDELV NRFLGRPWQQ DYGTAKNLVF PIGIIDRPYK HDQPPWTVDT SGAGANVLIL GAGGAGKTTA LQTLICAAAL THTPEQVQFY CLAYSGTALT TVANLPHVGG VSGPTDPYGV RRTVAEVLGL VRDRKRSFLE YDVPSMEVFR RRKFGGEPGG VPDDGFGDVY LVIDNYRALA EENEVLIEQV NQIINQGPSF GVHVVATADR ESELRPPVRS GFGSRVELRL AAVEDAKLVR SRFAKDVPPK PGRGMVAVNY VRLDSDPQAG LHTLVARPAL GSTPDAVFES DSVAAAVRQV AAGEARPVRR LPARFGLDQL RQVAAADRRQ GVGAGGIAWA ISELDLQPVY LNFADNAHLM VTGRRECGRT TTLATIMSEI GRIYAPGAST APPTSRPSAQ VWLVDPRRQL LTVLGSDYVE KFAYNLDGVA AMMDDLAAAL ARREPPPGLS AEELLSRSWW SGPEIFLIID DIQQLPPGFD SPLHKAAPWV TRAADVGLHV FVTRTFGGWS SAGSDPILRA LHQANAPLLV MDADPDEGFI RGKMKGGPLP RGRGLLMAED TGVFVQVAAT DLRR

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Experimental information

BeamInstrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3.3 mm
DetectorName: Pilatus 2M
Scan
Title: ESX-5 type VII secretion system protein EccC5 / Measurement date: Jul 15, 2016 / Storage temperature: 10 °C / Cell temperature: 20 °C / Exposure time: 0.045 sec. / Number of frames: 20 / Unit: 1/nm /
MinMax
Q0.0248 5.0307
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 578 /
MinMax
Q0.0854063 1.67506
P(R) point1 578
R0 23
Result
Type of curve: single_conc
Comments: Note: The data set presented in this entry was measured from is single fraction from an offline size-exclusion chromatography (SEC) purification.
ExperimentalStandardStandard errorPorod
MW141 kDa141 kDa15 159 kDa
Volume---255 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.108 0.001 0.107 0.001
Radius of gyration, Rg6.5 nm1 6.22 nm1

MinMaxError
D-23 0.5
Guinier point23 61 -

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