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- SASDBP4: Neisseria meningitidis iron-regulated outer membrane lipoprotein FrpD -

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Basic information

Entry
Database: SASBDB / ID: SASDBP4
SampleNeisseria meningitidis iron-regulated outer membrane lipoprotein FrpD
  • Iron-regulated outer membrane lipoprotein FrpD (protein), FrpD, Neisseria meningitidis
Function / homologyRTX iron-regulated FrpC / RTX iron-regulated protein FrpC / Prokaryotic membrane lipoprotein lipid attachment site profile. / RTX iron-regulated protein (frpC)
Function and homology information
Biological speciesNeisseria meningitidis (bacteria)
CitationDate: 2017 Jan 13
Title: Structural basis of the interaction between the putative adhesion-involved and iron-regulated FrpD and FrpC proteins of Neisseria meningitidis
Authors: Sviridova E / Rezacova P / Bondar A / Veverka V / Novak P / Schenk G / Svergun D / Kuta Smatanova I
Contact author
  • Gundolf Schenk (Stanford University, Stanford, California, USA)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #522
Type: dummy / Software: DAMMIN / Radius of dummy atoms: 2.00 A / Chi-square value: 1.425636 / P-value: 0.000725
Search similar-shape structures of this assembly by Omokage search (details)
Model #524
Type: atomic / Software: CRYSOL-PDB 5EDJ / Radius of dummy atoms: 1.90 A / Chi-square value: 1.067089 / P-value: 0.000850
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Neisseria meningitidis iron-regulated outer membrane lipoprotein FrpD
Specimen concentration: 8.4 mg/ml
BufferName: Tris-HCl / Concentration: 10.00 mM / pH: 7.4 / Composition: 150 mM NaCl, 0.01% NaN3
Entity #337Name: FrpD / Type: protein / Description: Iron-regulated outer membrane lipoprotein FrpD / Formula weight: 26.756 / Num. of mol.: 1 / Source: Neisseria meningitidis / References: UniProt: Q08840
Sequence: keqtsfnnpe pmtgfehtvt fdfqgtkmvi pygylarytq dnatkwlsdt pgqdaysinl ieisvyykkt dqgwvlepyn qqnkahfiqf lrdgldsvdd ivirkdacsl sttmgerllt ygvkkmpsay peyeayedkr hipenpyfhe fyyikkgenp aiithrnnri ...Sequence:
keqtsfnnpe pmtgfehtvt fdfqgtkmvi pygylarytq dnatkwlsdt pgqdaysinl ieisvyykkt dqgwvlepyn qqnkahfiqf lrdgldsvdd ivirkdacsl sttmgerllt ygvkkmpsay peyeayedkr hipenpyfhe fyyikkgenp aiithrnnri nqteedsyst svgscingft vqyypfirek qqltqqelvg yhqqveqlvq sfvnnsnkk

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Experimental information

BeamInstrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Title: Iron-regulated outer membrane lipoprotein FrpD / Measurement date: Oct 19, 2011 / Storage temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0855 6.032
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 396 /
MinMax
Q0.202 4.534
P(R) point42 437
R0 6.554
Result
Type of curve: single_conc /
ExperimentalPorod
MW13 kDa25 kDa
Volume-41 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I016.4 0.02 16.6 0.03
Radius of gyration, Rg2.1 nm0.003 2.2 nm0.1

MinMax
D-6.5
Guinier point39 153

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