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- SASDFQ9: Poly-uridine rU30 in 2 mM MgCl2 (Poly-uridine, rU30) -

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Open data


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Basic information

Entry
Database: SASBDB / ID: SASDFQ9
SamplePoly-uridine rU30 in 2 mM MgCl2
  • Poly-uridine (RNA), rU30
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #3498
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3499
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3500
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3501
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3502
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3503
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3504
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3505
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3506
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3507
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3508
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3509
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3510
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3511
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3512
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3513
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3514
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3515
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3516
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)
Model #3517
Type: atomic / Chi-square value: 1.089936 / P-value: 0.987621
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Poly-uridine rU30 in 2 mM MgCl2 / Specimen concentration: 0.40-1.20
BufferName: 1 mM Na-MOPS, 20 mM NaCl, 2 mM MgCl2, 20 µM EDTA / pH: 7
Entity #1770Name: rU30 / Type: RNA / Description: Poly-uridine / Formula weight: 9.203 / Num. of mol.: 1
Sequence:
UUUUUUUUUU UUUUUUUUUU UUUUUUUUUU

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.11 Å / Dist. spec. to detc.: 2.04 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Poly-uridine rU30 in 2 mM MgCl2 / Measurement date: Oct 24, 2015 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 10 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.01 0.27
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 254 /
MinMax
Q0.017 0.27
P(R) point1 254
R0 105
Result
Type of curve: extrapolated /
ExperimentalPorod
MW16 kDa-
Volume-15.6 nm3

P(R)GuinierGuinier error
Forward scattering, I033.9 33.83 0.37
Radius of gyration, Rg2.73 nm2.61 nm0.06

MinMax
D-10.5
Guinier point1 35

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