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- SASDDG7: Armless mitochondrial tRNA-Ile from Romanomermis culicivorax -

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Basic information

Entry
Database: SASBDB / ID: SASDDG7
SampleArmless mitochondrial tRNA-Ile from Romanomermis culicivorax
  • Isoleucyl transfer RNA (RNA), tRNA-Ile, Romanomermis culicivorax
Biological speciesRomanomermis culicivorax (invertebrata)
CitationDate: 2018 Jul 9
Title: Small but large enough: structural properties of armless mitochondrial tRNAs from the nematode Romanomermis culicivorax
Authors: Jühling T / Duchardt-Ferner E / Bonin S / Wöhnert J / Pütz J / Florentz C / Betat H / Sauter C
Contact author
  • Claude Sauter (IBMC - CNRS)

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Structure visualization

Structure viewerMolecule:
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Models

Model #2042
Type: atomic / Chi-square value: 1.659
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Armless mitochondrial tRNA-Ile from Romanomermis culicivorax
BufferName: 50 mM HEPES-NaOH 10 mM MgCl2 / pH: 7.4
Entity #1091Name: tRNA-Ile / Type: RNA / Description: Isoleucyl transfer RNA / Formula weight: 15.115 / Num. of mol.: 1 / Source: Romanomermis culicivorax
Sequence:
CUUAAUAGAG AACAAUUUAA AUUGAUAAUU UAAAUUAAAA UUUAAGA

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.1033 Å / Dist. spec. to detc.: 2.8 mm
DetectorName: AVIEX PCCD170170 / Type: CCD
Scan
Title: Armless mitochondrial tRNA-Ile from Romanomermis culicivorax
Measurement date: Dec 16, 2015 / Storage temperature: 4 °C / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 240 / Unit: 1/A /
MinMax
Q0.0062 0.4003
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 415 /
MinMax
Q0.0153346 0.250307
P(R) point1 415
R0 67.36
Result
Type of curve: sec /
ExperimentalPorod
MW14.8 kDa-
Volume-19.7 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.01758 2.0E-5 0.01748 4.0E-5
Radius of gyration, Rg2.09 nm0.004 2.03 nm0.007

MinMax
D-6.74
Guinier point43 93

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